Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 LBH-204ENST00000406087 559 ntTSL 4 BASIC20.47■□□□□ 0.87
LRCH3Q96II8 NUS1P2-201ENST00000417358 873 ntBASIC20.47■□□□□ 0.87
LRCH3Q96II8 WBP2-203ENST00000433525 928 ntTSL 2 BASIC20.47■□□□□ 0.87
LRCH3Q96II8 FIS1-203ENST00000442303 631 ntTSL 3 BASIC20.47■□□□□ 0.87
LRCH3Q96II8 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
LRCH3Q96II8 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC20.47■□□□□ 0.87
LRCH3Q96II8 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC20.47■□□□□ 0.87
LRCH3Q96II8 Z69720.1-201ENST00000601483 472 ntBASIC20.47■□□□□ 0.87
LRCH3Q96II8 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC20.47■□□□□ 0.87
LRCH3Q96II8 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
LRCH3Q96II8 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
LRCH3Q96II8 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
LRCH3Q96II8 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
LRCH3Q96II8 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
LRCH3Q96II8 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
LRCH3Q96II8 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
LRCH3Q96II8 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
LRCH3Q96II8 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
LRCH3Q96II8 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
LRCH3Q96II8 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
LRCH3Q96II8 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
LRCH3Q96II8 PHGDH-210ENST00000641115 1638 ntBASIC20.46■□□□□ 0.87
LRCH3Q96II8 KRT8P11-201ENST00000409686 1436 ntBASIC20.46■□□□□ 0.87
LRCH3Q96II8 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC20.46■□□□□ 0.87
LRCH3Q96II8 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC20.46■□□□□ 0.87
LRCH3Q96II8 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC20.46■□□□□ 0.87
LRCH3Q96II8 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
LRCH3Q96II8 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
LRCH3Q96II8 AL035633.1-201ENST00000406139 838 ntBASIC20.46■□□□□ 0.87
LRCH3Q96II8 AC112482.1-201ENST00000492080 688 ntBASIC20.46■□□□□ 0.87
LRCH3Q96II8 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC20.46■□□□□ 0.87
LRCH3Q96II8 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
LRCH3Q96II8 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC20.46■□□□□ 0.87
LRCH3Q96II8 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC20.46■□□□□ 0.87
LRCH3Q96II8 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC20.46■□□□□ 0.87
LRCH3Q96II8 CAND2-206ENST00000626378 333 ntTSL 5 BASIC20.46■□□□□ 0.87
LRCH3Q96II8 AC134684.3-201ENST00000641758 218 ntBASIC20.46■□□□□ 0.87
LRCH3Q96II8 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
LRCH3Q96II8 AL391807.1-203ENST00000604392 2365 ntBASIC20.46■□□□□ 0.87
LRCH3Q96II8 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC20.46■□□□□ 0.87
LRCH3Q96II8 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
LRCH3Q96II8 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC20.46■□□□□ 0.87
LRCH3Q96II8 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
LRCH3Q96II8 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
LRCH3Q96II8 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC20.45■□□□□ 0.86
LRCH3Q96II8 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
LRCH3Q96II8 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC20.45■□□□□ 0.86
LRCH3Q96II8 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
LRCH3Q96II8 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
LRCH3Q96II8 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
LRCH3Q96II8 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC20.45■□□□□ 0.86
LRCH3Q96II8 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC20.45■□□□□ 0.86
LRCH3Q96II8 IGHV3OR16-7-201ENST00000604106 360 ntBASIC20.45■□□□□ 0.86
LRCH3Q96II8 IGHV3-41-201ENST00000613121 348 ntBASIC20.45■□□□□ 0.86
LRCH3Q96II8 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
LRCH3Q96II8 AL157888.1-201ENST00000631930 593 ntBASIC20.45■□□□□ 0.86
LRCH3Q96II8 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
LRCH3Q96II8 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
LRCH3Q96II8 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
LRCH3Q96II8 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC20.45■□□□□ 0.86
LRCH3Q96II8 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
LRCH3Q96II8 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
LRCH3Q96II8 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
LRCH3Q96II8 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
LRCH3Q96II8 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
LRCH3Q96II8 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC20.44■□□□□ 0.86
LRCH3Q96II8 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC20.44■□□□□ 0.86
LRCH3Q96II8 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
LRCH3Q96II8 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
LRCH3Q96II8 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC20.44■□□□□ 0.86
LRCH3Q96II8 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC20.44■□□□□ 0.86
LRCH3Q96II8 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC20.44■□□□□ 0.86
LRCH3Q96II8 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
LRCH3Q96II8 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC20.44■□□□□ 0.86
LRCH3Q96II8 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC20.44■□□□□ 0.86
LRCH3Q96II8 AC090616.6-201ENST00000582640 721 ntBASIC20.44■□□□□ 0.86
LRCH3Q96II8 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
LRCH3Q96II8 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
LRCH3Q96II8 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
LRCH3Q96II8 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
LRCH3Q96II8 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
LRCH3Q96II8 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC20.44■□□□□ 0.86
LRCH3Q96II8 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
LRCH3Q96II8 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
LRCH3Q96II8 AL121603.2-201ENST00000557373 2117 ntBASIC20.44■□□□□ 0.86
LRCH3Q96II8 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
LRCH3Q96II8 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC20.43■□□□□ 0.86
LRCH3Q96II8 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
LRCH3Q96II8 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC20.43■□□□□ 0.86
LRCH3Q96II8 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
LRCH3Q96II8 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
LRCH3Q96II8 SCARNA2-201ENST00000458748 420 ntBASIC20.43■□□□□ 0.86
LRCH3Q96II8 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC20.43■□□□□ 0.86
LRCH3Q96II8 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC20.43■□□□□ 0.86
LRCH3Q96II8 AC092364.2-202ENST00000597012 1073 ntBASIC20.43■□□□□ 0.86
LRCH3Q96II8 AL356488.2-201ENST00000602755 427 ntBASIC20.43■□□□□ 0.86
LRCH3Q96II8 CCNC-219ENST00000627680 896 ntTSL 5 BASIC20.43■□□□□ 0.86
LRCH3Q96II8 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC20.43■□□□□ 0.86
LRCH3Q96II8 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
LRCH3Q96II8 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms