Protein–RNA interactions for Protein: P83369

LSM11, U7 snRNA-associated Sm-like protein LSm11, humanhuman

Known RBP eCLIP

Length 360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM11P83369 URM1-203ENST00000372853 2650 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.661e-9■□□□□ 10.1
LSM11P83369 URM1-204ENST00000452446 2944 ntTSL 2 BASIC9.42□□□□□ -0.91e-9■□□□□ 10.1
LSM11P83369 RETSAT-201ENST00000295802 3100 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.931e-9■□□□□ 10.1
LSM11P83369 URM1-202ENST00000372850 3045 ntTSL 1 (best) BASIC8.62□□□□□ -1.031e-9■□□□□ 10.1
LSM11P83369 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC21.27■■□□□ 12e-9■□□□□ 10.1
LSM11P83369 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.862e-9■□□□□ 10.1
LSM11P83369 TRIM28-213ENST00000598355 714 ntTSL 214.11□□□□□ -0.152e-9■□□□□ 10.1
LSM11P83369 TRIM28-206ENST00000595974 665 ntTSL 314.09□□□□□ -0.152e-9■□□□□ 10.1
LSM11P83369 TRIM28-207ENST00000597136 1552 ntTSL 213.45□□□□□ -0.262e-9■□□□□ 10.1
LSM11P83369 NR2F2-AS1-202ENST00000557863 515 ntTSL 314.08□□□□□ -0.163e-40■□□□□ 10
LSM11P83369 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.352e-10■□□□□ 10
LSM11P83369 AC139887.2-201ENST00000503571 531 ntTSL 4 BASIC10.52□□□□□ -0.733e-6■□□□□ 10
LSM11P83369 CHKB-210ENST00000484266 1401 ntTSL 229.16■■■□□ 2.262e-6■□□□□ 10
LSM11P83369 CHKB-212ENST00000492582 2069 ntTSL 227.02■■□□□ 1.922e-6■□□□□ 10
LSM11P83369 CHKB-208ENST00000479003 2114 ntTSL 225.75■■□□□ 1.712e-6■□□□□ 10
LSM11P83369 CHKB-CPT1B-203ENST00000492556 4906 ntTSL 219.19■□□□□ 0.662e-6■□□□□ 10
LSM11P83369 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.572e-6■□□□□ 10
LSM11P83369 CHKB-209ENST00000481673 1856 ntTSL 1 (best)18.37■□□□□ 0.532e-6■□□□□ 10
LSM11P83369 CHKB-206ENST00000471515 657 ntTSL 37.53□□□□□ -1.22e-6■□□□□ 10
LSM11P83369 ATG4B-217ENST00000475693 2237 ntTSL 216.62■□□□□ 0.251e-6■□□□□ 10
LSM11P83369 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.041e-6■□□□□ 10
LSM11P83369 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC14.17□□□□□ -0.141e-6■□□□□ 10
LSM11P83369 MINDY2-205ENST00000560289 1859 ntTSL 1 (best)22.82■■□□□ 1.242e-8■□□□□ 10
LSM11P83369 MINDY2-201ENST00000316848 4866 ntTSL 1 (best)15.83■□□□□ 0.122e-8■□□□□ 10
LSM11P83369 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.062e-8■□□□□ 10
LSM11P83369 MINDY2-203ENST00000559228 9238 ntAPPRIS P3 TSL 2 BASIC13.08□□□□□ -0.322e-8■□□□□ 10
LSM11P83369 MINDY2-204ENST00000559745 463 ntTSL 28.06□□□□□ -1.122e-8■□□□□ 10
LSM11P83369 MIR34AHG-203ENST00000635687 4211 ntTSL 1 (best) BASIC12.28□□□□□ -0.442e-6■□□□□ 10
LSM11P83369 RAB24-207ENST00000495458 1608 ntTSL 219.64■□□□□ 0.732e-6■□□□□ 10
LSM11P83369 RAB24-206ENST00000478234 1820 ntTSL 219.49■□□□□ 0.712e-6■□□□□ 10
LSM11P83369 RAB24-205ENST00000471466 1642 ntTSL 519.22■□□□□ 0.672e-6■□□□□ 10
LSM11P83369 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.672e-6■□□□□ 10
LSM11P83369 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC19.03■□□□□ 0.642e-6■□□□□ 10
LSM11P83369 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.032e-6■□□□□ 10
LSM11P83369 FTCD-205ENST00000446405 436 ntTSL 316.48■□□□□ 0.236e-12■□□□□ 10
LSM11P83369 HNRNPH1-240ENST00000521720 539 ntTSL 314.29□□□□□ -0.123e-8■□□□□ 10
LSM11P83369 HNRNPH1-205ENST00000502632 1509 ntTSL 213.78□□□□□ -0.23e-8■□□□□ 10
LSM11P83369 HNRNPH1-236ENST00000519958 885 ntTSL 510.5□□□□□ -0.733e-8■□□□□ 10
LSM11P83369 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC19.34■□□□□ 0.692e-6■□□□□ 10
LSM11P83369 ABCB6-202ENST00000295750 2238 ntTSL 516.33■□□□□ 0.23e-6■□□□□ 10
LSM11P83369 ATG9A-215ENST00000446716 5245 ntTSL 215.62■□□□□ 0.093e-6■□□□□ 10
LSM11P83369 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.043e-6■□□□□ 10
LSM11P83369 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.192e-6■□□□□ 10
LSM11P83369 ABCB6-204ENST00000443805 679 ntTSL 213.53□□□□□ -0.243e-6■□□□□ 10
LSM11P83369 ABCB6-207ENST00000485773 962 ntTSL 211.82□□□□□ -0.523e-6■□□□□ 10
LSM11P83369 INPP5D-204ENST00000445964 4845 ntAPPRIS P3 TSL 1 (best) BASIC11.61□□□□□ -0.552e-6■□□□□ 10
LSM11P83369 ABCB6-208ENST00000487380 768 ntTSL 210.94□□□□□ -0.663e-6■□□□□ 10
LSM11P83369 ACP1-202ENST00000272067 1552 ntAPPRIS ALT1 TSL 1 (best) BASIC10.84□□□□□ -0.672e-6■□□□□ 10
LSM11P83369 ABCB6-213ENST00000497882 3008 ntTSL 210.71□□□□□ -0.73e-6■□□□□ 10
LSM11P83369 INPP5D-202ENST00000415617 3628 ntTSL 510.48□□□□□ -0.732e-6■□□□□ 10
LSM11P83369 ELOVL5-202ENST00000370913 580 ntTSL 1 (best) BASIC11.13□□□□□ -0.633e-8■□□□□ 10
LSM11P83369 ELOVL5-204ENST00000465983 696 ntTSL 311□□□□□ -0.653e-8■□□□□ 10
LSM11P83369 ELOVL5-206ENST00000486973 794 ntTSL 310.91□□□□□ -0.663e-8■□□□□ 10
LSM11P83369 KNTC1-203ENST00000423927 1250 ntTSL 49.8□□□□□ -0.843e-10■□□□□ 10
LSM11P83369 ELOVL5-205ENST00000485336 761 ntTSL 58.53□□□□□ -1.043e-8■□□□□ 10
LSM11P83369 ELOVL5-207ENST00000542638 2875 ntTSL 1 (best) BASIC7.57□□□□□ -1.23e-8■□□□□ 10
LSM11P83369 KNTC1-214ENST00000545065 782 ntTSL 57.25□□□□□ -1.253e-10■□□□□ 10
LSM11P83369 ELOVL5-201ENST00000304434 2827 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.373e-8■□□□□ 10
LSM11P83369 ELOVL5-203ENST00000370918 3081 ntTSL 2 BASIC6.3□□□□□ -1.43e-8■□□□□ 10
LSM11P83369 CFI-207ENST00000618244 1345 ntTSL 5 BASIC11.39□□□□□ -0.596e-7■□□□□ 10
LSM11P83369 CFI-205ENST00000512148 1914 ntAPPRIS ALT2 TSL 5 BASIC7.79□□□□□ -1.166e-7■□□□□ 10
LSM11P83369 CFI-202ENST00000394635 2053 ntAPPRIS ALT2 TSL 2 BASIC7.29□□□□□ -1.246e-7■□□□□ 10
LSM11P83369 CFI-201ENST00000394634 2159 ntAPPRIS P3 TSL 1 (best) BASIC6.75□□□□□ -1.336e-7■□□□□ 10
LSM11P83369 CFI-203ENST00000504853 2368 ntTSL 25.92□□□□□ -1.466e-7■□□□□ 10
LSM11P83369 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.278e-7■□□□□ 10
LSM11P83369 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC17.76■□□□□ 0.435e-6■□□□□ 10
LSM11P83369 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.415e-6■□□□□ 10
LSM11P83369 IFRD2-210ENST00000474556 1812 ntTSL 515.45■□□□□ 0.065e-6■□□□□ 10
LSM11P83369 PKDCC-208ENST00000490302 1447 ntTSL 215.3■□□□□ 0.048e-7■□□□□ 10
LSM11P83369 QARS-252ENST00000637908 637 ntTSL 513.97□□□□□ -0.178e-7■□□□□ 10
LSM11P83369 EIF4G1-232ENST00000466311 573 ntTSL 212.87□□□□□ -0.358e-7■□□□□ 10
LSM11P83369 PTPN23-201ENST00000265562 5244 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.438e-7■□□□□ 10
LSM11P83369 EIF4G1-225ENST00000448284 677 ntTSL 511.88□□□□□ -0.518e-7■□□□□ 10
LSM11P83369 ERCC2-204ENST00000391945 4153 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.528e-7■□□□□ 10
LSM11P83369 IFRD2-203ENST00000426499 664 ntTSL 511.72□□□□□ -0.535e-6■□□□□ 10
LSM11P83369 QARS-251ENST00000637543 2074 ntTSL 511.56□□□□□ -0.568e-7■□□□□ 10
LSM11P83369 GPX2-202ENST00000553522 1134 ntTSL 1 (best)10.87□□□□□ -0.676e-11■□□□□ 10
LSM11P83369 PTPN23-206ENST00000602307 5119 ntTSL 210.79□□□□□ -0.688e-7■□□□□ 10
LSM11P83369 EXOSC2-203ENST00000372352 1957 ntTSL 5 BASIC10.28□□□□□ -0.768e-7■□□□□ 10
LSM11P83369 EXOSC2-204ENST00000372358 2040 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.818e-7■□□□□ 10
LSM11P83369 EXOSC2-209ENST00000491115 739 ntTSL 59.27□□□□□ -0.938e-7■□□□□ 10
LSM11P83369 EXOSC2-207ENST00000467138 2766 ntTSL 1 (best)9.2□□□□□ -0.948e-7■□□□□ 10
LSM11P83369 EXOSC2-202ENST00000372351 1885 ntTSL 5 BASIC9.07□□□□□ -0.968e-7■□□□□ 10
LSM11P83369 GPX2-205ENST00000612794 1084 ntAPPRIS ALT1 TSL 5 BASIC8.8□□□□□ -16e-11■□□□□ 10
LSM11P83369 EXOSC2-211ENST00000546165 1956 ntTSL 2 BASIC8.8□□□□□ -18e-7■□□□□ 10
LSM11P83369 EXOSC2-205ENST00000430138 2533 ntTSL 28.41□□□□□ -1.068e-7■□□□□ 10
LSM11P83369 GPX2-201ENST00000389614 990 ntAPPRIS P2 TSL 1 (best) BASIC7.64□□□□□ -1.196e-11■□□□□ 10
LSM11P83369 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.14e-7■□□□□ 10
LSM11P83369 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.054e-7■□□□□ 10
LSM11P83369 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.074e-7■□□□□ 10
LSM11P83369 NEAT1-202ENST00000501122 22743 ntBASIC4.33□□□□□ -1.727e-39■□□□□ 10
LSM11P83369 STARD3-214ENST00000578577 1511 ntTSL 219.27■□□□□ 0.682e-7■□□□□ 10
LSM11P83369 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC17.62■□□□□ 0.412e-7■□□□□ 10
LSM11P83369 STARD3-224ENST00000583639 452 ntTSL 39.65□□□□□ -0.862e-7■□□□□ 10
LSM11P83369 MMS19-218ENST00000485400 1513 ntTSL 213.76□□□□□ -0.218e-7■□□□□ 10
LSM11P83369 MMS19-212ENST00000444411 640 ntTSL 213.18□□□□□ -0.38e-7■□□□□ 10
LSM11P83369 SCFD1-203ENST00000458591 2359 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.253e-6■□□□□ 10
LSM11P83369 SCFD1-218ENST00000556256 428 ntTSL 212.36□□□□□ -0.433e-6■□□□□ 10
LSM11P83369 SCFD1-220ENST00000556486 974 ntTSL 212.2□□□□□ -0.463e-6■□□□□ 10
LSM11P83369 SCFD1-211ENST00000554437 688 ntTSL 311.49□□□□□ -0.573e-6■□□□□ 10
Retrieved 100 of 11,495 protein–RNA pairs in 54 ms