RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 AEBP2Q6ZN18 517 aaPredicted RBP28.37■■■□□ 2.13
SCFD1-220ENST00000556486 CHIC1Q5VXU3 224 aa27.35■■□□□ 1.97
SCFD1-220ENST00000556486 NISCHQ9Y2I1 1504 aa25.42■■□□□ 1.66
SCFD1-220ENST00000556486 SENP3Q9H4L4 574 aaPredicted RBP24.09■■□□□ 1.45
SCFD1-220ENST00000556486 PHF23Q9BUL5 403 aaPredicted RBP24.04■■□□□ 1.44
SCFD1-220ENST00000556486 ABCC9O60706 1549 aa23.53■■□□□ 1.36
SCFD1-220ENST00000556486 CCDC180Q9P1Z9 1646 aa22.97■■□□□ 1.27
SCFD1-220ENST00000556486 FOXD1Q16676 465 aa22.44■■□□□ 1.18
SCFD1-220ENST00000556486 DNAJC5BQ9UF47 199 aa22.43■■□□□ 1.18
SCFD1-220ENST00000556486 RB1CC1Q8TDY2 1594 aa22.08■■□□□ 1.13
SCFD1-220ENST00000556486 PLPPR3Q6T4P5 718 aa22.02■■□□□ 1.12
SCFD1-220ENST00000556486 PABPN1Q86U42 306 aaKnown RBP eCLIP21.85■■□□□ 1.093e-6■■■■□ 24.8
SCFD1-220ENST00000556486 DCAF8L2P0C7V8 631 aa21.79■■□□□ 1.08
SCFD1-220ENST00000556486 NACADO15069 1562 aa21.78■■□□□ 1.08
SCFD1-220ENST00000556486 UNC13AQ9UPW8 1703 aa21.72■■□□□ 1.07
SCFD1-220ENST00000556486 BICRAQ9NZM4 1560 aa21.51■■□□□ 1.03
SCFD1-220ENST00000556486 PPP6R1Q9UPN7 881 aa21.32■■□□□ 1
SCFD1-220ENST00000556486 ADRA2BP18089 450 aa21.25■□□□□ 0.99
SCFD1-220ENST00000556486 MYO15BQ96JP2 1530 aa21.24■□□□□ 0.99
SCFD1-220ENST00000556486 CC2D2AQ9P2K1 1620 aa21.18■□□□□ 0.98
SCFD1-220ENST00000556486 CECR2Q9BXF3 1484 aa21.17■□□□□ 0.98
SCFD1-220ENST00000556486 SCRIBQ14160 1630 aa21.07■□□□□ 0.96
SCFD1-220ENST00000556486 PIAS4Q8N2W9 510 aaPredicted RBP21.02■□□□□ 0.96
SCFD1-220ENST00000556486 EIF4G1Q04637 1599 aaKnown RBP21.01■□□□□ 0.95
SCFD1-220ENST00000556486 ZCCHC6Q5VYS8 1495 aaKnown RBP20.97■□□□□ 0.95
SCFD1-220ENST00000556486 SHROOM4Q9ULL8 1493 aa20.97■□□□□ 0.95
SCFD1-220ENST00000556486 DCAF1Q9Y4B6 1507 aa20.85■□□□□ 0.93
SCFD1-220ENST00000556486 MSH5O43196 834 aa20.8■□□□□ 0.92
SCFD1-220ENST00000556486 DNAJC5Q9H3Z4 198 aa20.79■□□□□ 0.92
SCFD1-220ENST00000556486 ERCC6Q03468 1493 aa20.3■□□□□ 0.84
SCFD1-220ENST00000556486 CUX2O14529 1486 aa20.29■□□□□ 0.84
SCFD1-220ENST00000556486 NESP48681 1621 aa20.1■□□□□ 0.81
SCFD1-220ENST00000556486 NCAPD3P42695 1498 aa20.1■□□□□ 0.81
SCFD1-220ENST00000556486 ATAD2BQ9ULI0 1458 aa20.05■□□□□ 0.8
SCFD1-220ENST00000556486 SMARCA4P51532 1647 aa19.96■□□□□ 0.79
SCFD1-220ENST00000556486 HMGXB3Q12766 1538 aa19.94■□□□□ 0.78
SCFD1-220ENST00000556486 SMARCA2P51531 1590 aa19.93■□□□□ 0.78
SCFD1-220ENST00000556486 THOC2Q8NI27 1593 aaKnown RBP19.92■□□□□ 0.78
SCFD1-220ENST00000556486 TRIM41Q8WV44 630 aa19.88■□□□□ 0.77
SCFD1-220ENST00000556486 BAZ1BQ9UIG0 1483 aaKnown RBP19.86■□□□□ 0.77
SCFD1-220ENST00000556486 KIF21AQ7Z4S6 1674 aa19.84■□□□□ 0.77
SCFD1-220ENST00000556486 LAMC3Q9Y6N6 1575 aa19.75■□□□□ 0.75
SCFD1-220ENST00000556486 BAZ1AQ9NRL2 1556 aaPredicted RBP19.74■□□□□ 0.75
SCFD1-220ENST00000556486 PEG3Q9GZU2 1588 aa19.67■□□□□ 0.74
SCFD1-220ENST00000556486 MROH2BQ7Z745 1585 aa19.65■□□□□ 0.74
SCFD1-220ENST00000556486 KCNA4P22459 653 aa19.64■□□□□ 0.73
SCFD1-220ENST00000556486 PDS5BQ9NTI5 1447 aa19.63■□□□□ 0.73
SCFD1-220ENST00000556486 POTEDQ86YR6 584 aa19.6■□□□□ 0.73
SCFD1-220ENST00000556486 EHMT2Q96KQ7 1210 aa19.6■□□□□ 0.73
SCFD1-220ENST00000556486 MRC2Q9UBG0 1479 aa19.54■□□□□ 0.72
SCFD1-220ENST00000556486 CADPSQ9ULU8 1353 aa19.5■□□□□ 0.71
SCFD1-220ENST00000556486 WDR62O43379 1518 aa19.5■□□□□ 0.71
SCFD1-220ENST00000556486 WIZO95785 1651 aa19.44■□□□□ 0.7
SCFD1-220ENST00000556486 SCAF1Q9H7N4 1312 aaKnown RBP19.43■□□□□ 0.7
SCFD1-220ENST00000556486 MAPK8IP2Q13387 824 aaPredicted RBP19.4■□□□□ 0.7
SCFD1-220ENST00000556486 CEP164Q9UPV0 1460 aa19.39■□□□□ 0.69
SCFD1-220ENST00000556486 PPP4R3CPQ6ZMV5 832 aa19.37■□□□□ 0.69
SCFD1-220ENST00000556486 FANCD2Q9BXW9 1451 aa19.35■□□□□ 0.69
SCFD1-220ENST00000556486 OSCARQ8IYS5 282 aa19.32■□□□□ 0.68
SCFD1-220ENST00000556486 URB2Q14146 1524 aaKnown RBP19.24■□□□□ 0.67
SCFD1-220ENST00000556486 RIMBP3CA6NJZ7 1639 aa19.22■□□□□ 0.67
SCFD1-220ENST00000556486 RIMBP3BA6NNM3 1639 aa19.22■□□□□ 0.67
SCFD1-220ENST00000556486 RIMBP3Q9UFD9 1639 aa19.22■□□□□ 0.67
SCFD1-220ENST00000556486 DMRT2Q9Y5R5 561 aa19.2■□□□□ 0.66
SCFD1-220ENST00000556486 CFTRP13569 1480 aa19.19■□□□□ 0.66
SCFD1-220ENST00000556486 ZNF608Q9ULD9 1512 aaPredicted RBP19.1■□□□□ 0.65
SCFD1-220ENST00000556486 ARHGEF11O15085 1522 aa19.08■□□□□ 0.64
SCFD1-220ENST00000556486 TOP2AP11388 1531 aaKnown RBP19.07■□□□□ 0.64
SCFD1-220ENST00000556486 PRDM2Q13029 1718 aa19.04■□□□□ 0.64
SCFD1-220ENST00000556486 RSF1Q96T23 1441 aaPredicted RBP19.04■□□□□ 0.64
SCFD1-220ENST00000556486 CYB5RLQ6IPT4 315 aa18.99■□□□□ 0.63
SCFD1-220ENST00000556486 IFT140Q96RY7 1462 aa18.97■□□□□ 0.63
SCFD1-220ENST00000556486 EIF4G3O43432 1585 aaKnown RBP18.97■□□□□ 0.63
SCFD1-220ENST00000556486 CHD1O14646 1710 aa18.95■□□□□ 0.62
SCFD1-220ENST00000556486 TRHP20396 242 aaPredicted RBP18.95■□□□□ 0.62
SCFD1-220ENST00000556486 TOPBP1Q92547 1522 aa18.93■□□□□ 0.62
SCFD1-220ENST00000556486 CNKSR2Q8WXI2 1034 aa18.91■□□□□ 0.62
SCFD1-220ENST00000556486 SLC4A1APQ9BWU0 796 aaKnown RBP18.89■□□□□ 0.61
SCFD1-220ENST00000556486 CSRNP3Q8WYN3 585 aa18.88■□□□□ 0.61
SCFD1-220ENST00000556486 CCDC88BA6NC98 1476 aa18.88■□□□□ 0.61
SCFD1-220ENST00000556486 ARAP1Q96P48 1450 aa18.88■□□□□ 0.61
SCFD1-220ENST00000556486 AQRO60306 1485 aaKnown RBP eCLIP18.86■□□□□ 0.612e-9■■■■■ 39.4
SCFD1-220ENST00000556486 FBLN2P98095 1184 aa18.86■□□□□ 0.61
SCFD1-220ENST00000556486 DNMBPQ6XZF7 1577 aa18.81■□□□□ 0.6
SCFD1-220ENST00000556486 TARBP1Q13395 1621 aaKnown RBP18.8■□□□□ 0.6
SCFD1-220ENST00000556486 ABCC8Q09428 1581 aa18.73■□□□□ 0.59
SCFD1-220ENST00000556486 NCBP3Q53F19 620 aaKnown RBP18.72■□□□□ 0.59
SCFD1-220ENST00000556486 RAD54L2Q9Y4B4 1467 aa18.71■□□□□ 0.59
SCFD1-220ENST00000556486 POLA1P09884 1462 aaPredicted RBP18.71■□□□□ 0.59
SCFD1-220ENST00000556486 HOXD11P31277 338 aaPredicted RBP18.68■□□□□ 0.58
SCFD1-220ENST00000556486 TDRD9Q8NDG6 1382 aaKnown RBP18.68■□□□□ 0.58
SCFD1-220ENST00000556486 SNAPC4Q5SXM2 1469 aa18.65■□□□□ 0.58
SCFD1-220ENST00000556486 RNF216Q9NWF9 866 aaPredicted RBP18.63■□□□□ 0.57
SCFD1-220ENST00000556486 CLASP1Q7Z460 1538 aa18.62■□□□□ 0.57
SCFD1-220ENST00000556486 SOGA1O94964 1423 aa18.59■□□□□ 0.57
SCFD1-220ENST00000556486 SYNJ1O43426 1573 aa18.56■□□□□ 0.56
SCFD1-220ENST00000556486 CHMP7Q8WUX9 453 aaPredicted RBP18.56■□□□□ 0.56
SCFD1-220ENST00000556486 FGD5Q6ZNL6 1462 aa18.56■□□□□ 0.56
SCFD1-220ENST00000556486 CUX1P39880 1505 aa18.49■□□□□ 0.55
SCFD1-220ENST00000556486 MAGI1Q96QZ7 1491 aaPredicted RBP18.48■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms