RNA–Protein interactions for RNA: ENST00000556256.1

SCFD1-218, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 428 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-218ENST00000556256 AEBP2Q6ZN18 517 aaPredicted RBP29.06■■■□□ 2.24
SCFD1-218ENST00000556256 CHIC1Q5VXU3 224 aa27.43■■□□□ 1.98
SCFD1-218ENST00000556256 SENP3Q9H4L4 574 aaPredicted RBP24.77■■□□□ 1.56
SCFD1-218ENST00000556256 PHF23Q9BUL5 403 aaPredicted RBP24.47■■□□□ 1.51
SCFD1-218ENST00000556256 FOXD1Q16676 465 aa23.15■■□□□ 1.3
SCFD1-218ENST00000556256 PLPPR3Q6T4P5 718 aa21.83■■□□□ 1.09
SCFD1-218ENST00000556256 MSH5O43196 834 aa21.67■■□□□ 1.06
SCFD1-218ENST00000556256 PIAS4Q8N2W9 510 aaPredicted RBP21.56■■□□□ 1.04
SCFD1-218ENST00000556256 PPP6R1Q9UPN7 881 aa21.56■■□□□ 1.04
SCFD1-218ENST00000556256 ADRA2BP18089 450 aa21.47■■□□□ 1.03
SCFD1-218ENST00000556256 POTEDQ86YR6 584 aa21.44■■□□□ 1.02
SCFD1-218ENST00000556256 MAPK8IP2Q13387 824 aaPredicted RBP19.78■□□□□ 0.76
SCFD1-218ENST00000556256 DMRT2Q9Y5R5 561 aa19.63■□□□□ 0.73
SCFD1-218ENST00000556256 SCAF1Q9H7N4 1312 aaKnown RBP19.6■□□□□ 0.73
SCFD1-218ENST00000556256 PPP4R3CPQ6ZMV5 832 aa19.14■□□□□ 0.65
SCFD1-218ENST00000556256 HOXD11P31277 338 aaPredicted RBP18.85■□□□□ 0.61
SCFD1-218ENST00000556256 DCAF8L1A6NGE4 600 aa18.84■□□□□ 0.61
SCFD1-218ENST00000556256 CNKSR2Q8WXI2 1034 aa18.79■□□□□ 0.6
SCFD1-218ENST00000556256 CACNB1Q02641 598 aaPredicted RBP18.72■□□□□ 0.59
SCFD1-218ENST00000556256 RNF216Q9NWF9 866 aaPredicted RBP18.67■□□□□ 0.58
SCFD1-218ENST00000556256 RNF39Q9H2S5 420 aa18.51■□□□□ 0.55
SCFD1-218ENST00000556256 NCBP3Q53F19 620 aaKnown RBP18.34■□□□□ 0.53
SCFD1-218ENST00000556256 C1QBPQ07021 282 aaKnown RBP18.21■□□□□ 0.51
SCFD1-218ENST00000556256 DNAJC5BQ9UF47 199 aa18.21■□□□□ 0.51
SCFD1-218ENST00000556256 NPM3O75607 178 aaKnown RBP18.09■□□□□ 0.49
SCFD1-218ENST00000556256 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.97■□□□□ 0.47
SCFD1-218ENST00000556256 KCNA4P22459 653 aa17.62■□□□□ 0.41
SCFD1-218ENST00000556256 U3KPZ7 1027 aaPredicted RBP17.57■□□□□ 0.4
SCFD1-218ENST00000556256 SPINK5Q9NQ38 1064 aaPredicted RBP17.38■□□□□ 0.37
SCFD1-218ENST00000556256 CAPN15O75808 1086 aa17.34■□□□□ 0.37
SCFD1-218ENST00000556256 SLC4A2P04920 1241 aa17.34■□□□□ 0.37
SCFD1-218ENST00000556256 DSG3P32926 999 aa17.28■□□□□ 0.36
SCFD1-218ENST00000556256 TRHP20396 242 aaPredicted RBP17.03■□□□□ 0.32
SCFD1-218ENST00000556256 APLP2Q06481 763 aa17.01■□□□□ 0.31
SCFD1-218ENST00000556256 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.99■□□□□ 0.31
SCFD1-218ENST00000556256 HNRNPUL2Q1KMD3 747 aaKnown RBP16.99■□□□□ 0.31
SCFD1-218ENST00000556256 ZNF219Q9P2Y4 722 aaPredicted RBP16.96■□□□□ 0.31
SCFD1-218ENST00000556256 ABCB7O75027 752 aa16.93■□□□□ 0.3
SCFD1-218ENST00000556256 SAMD1Q6SPF0 538 aaPredicted RBP16.89■□□□□ 0.29
SCFD1-218ENST00000556256 POTEHQ6S545 545 aa16.76■□□□□ 0.27
SCFD1-218ENST00000556256 MYCNP04198 464 aaPredicted RBP16.7■□□□□ 0.26
SCFD1-218ENST00000556256 SLC4A1APQ9BWU0 796 aaKnown RBP16.59■□□□□ 0.25
SCFD1-218ENST00000556256 POLA2Q14181 598 aa16.56■□□□□ 0.24
SCFD1-218ENST00000556256 RBM42Q9BTD8 480 aaKnown RBP16.45■□□□□ 0.22
SCFD1-218ENST00000556256 FOXD4L1Q9NU39 408 aa16.45■□□□□ 0.22
SCFD1-218ENST00000556256 ATF5Q9Y2D1 282 aaPredicted RBP16.39■□□□□ 0.21
SCFD1-218ENST00000556256 ZBTB22O15209 634 aa16.21■□□□□ 0.19
SCFD1-218ENST00000556256 CHRDL2Q6WN34 429 aa16.19■□□□□ 0.18
SCFD1-218ENST00000556256 ZBTB12Q9Y330 459 aaPredicted RBP16.15■□□□□ 0.18
SCFD1-218ENST00000556256 AKT1S1Q96B36 256 aa16.06■□□□□ 0.16
SCFD1-218ENST00000556256 OSCARQ8IYS5 282 aa16■□□□□ 0.15
SCFD1-218ENST00000556256 ATXN8OSP0DMR3 200 aa15.97■□□□□ 0.15
SCFD1-218ENST00000556256 REM2Q8IYK8 340 aaPredicted RBP15.94■□□□□ 0.14
SCFD1-218ENST00000556256 PIP4P2Q8N4L2 257 aa15.77■□□□□ 0.12
SCFD1-218ENST00000556256 PITPNM1O00562 1244 aa15.76■□□□□ 0.11
SCFD1-218ENST00000556256 FBLN2P98095 1184 aa15.71■□□□□ 0.11
SCFD1-218ENST00000556256 SPDYE2BA6NHP3 402 aa15.66■□□□□ 0.1
SCFD1-218ENST00000556256 SPDYE6P0CI01 402 aa15.66■□□□□ 0.1
SCFD1-218ENST00000556256 FXR2P51116 673 aaKnown RBP eCLIP15.66■□□□□ 0.1
SCFD1-218ENST00000556256 SPDYE2Q495Y8 402 aa15.66■□□□□ 0.1
SCFD1-218ENST00000556256 SP7Q8TDD2 431 aaPredicted RBP15.64■□□□□ 0.09
SCFD1-218ENST00000556256 MKRN4PQ13434 485 aaPredicted RBP15.62■□□□□ 0.09
SCFD1-218ENST00000556256 HAX1O00165 279 aa15.54■□□□□ 0.08
SCFD1-218ENST00000556256 ZNF692Q9BU19 519 aaPredicted RBP15.47■□□□□ 0.07
SCFD1-218ENST00000556256 SSUH2Q9Y2M2 353 aa15.44■□□□□ 0.06
SCFD1-218ENST00000556256 SPDYE1Q8NFV5 336 aaPredicted RBP15.43■□□□□ 0.06
SCFD1-218ENST00000556256 CLEC11AQ9Y240 323 aa15.43■□□□□ 0.06
SCFD1-218ENST00000556256 EVX2Q03828 476 aa15.37■□□□□ 0.05
SCFD1-218ENST00000556256 PRKAR2AP13861 404 aaKnown RBP15.35■□□□□ 0.05
SCFD1-218ENST00000556256 CSRNP3Q8WYN3 585 aa15.33■□□□□ 0.04
SCFD1-218ENST00000556256 PABPN1Q86U42 306 aaKnown RBP eCLIP15.24■□□□□ 0.035e-6■■■■□ 22.2
SCFD1-218ENST00000556256 C19orf67A6NJJ6 358 aa15.16■□□□□ 0.02
SCFD1-218ENST00000556256 CHADLQ6NUI6 762 aa15.16■□□□□ 0.02
SCFD1-218ENST00000556256 PRR29P0C7W0 189 aa15.15■□□□□ 0.02
SCFD1-218ENST00000556256 EHMT2Q96KQ7 1210 aa15.03■□□□□ -0
SCFD1-218ENST00000556256 GABBR2O75899 941 aa14.99□□□□□ -0.01
SCFD1-218ENST00000556256 FARP1Q9Y4F1 1045 aaPredicted RBP14.91□□□□□ -0.02
SCFD1-218ENST00000556256 CD44P16070 742 aaKnown RBP14.84□□□□□ -0.03
SCFD1-218ENST00000556256 SPDYE4A6NLX3 237 aa14.79□□□□□ -0.04
SCFD1-218ENST00000556256 STAG3Q9UJ98 1225 aa14.77□□□□□ -0.05
SCFD1-218ENST00000556256 CREBZFQ9NS37 354 aa14.74□□□□□ -0.05
SCFD1-218ENST00000556256 POTEIP0CG38 1075 aa14.68□□□□□ -0.06
SCFD1-218ENST00000556256 LHX8Q68G74 356 aa14.68□□□□□ -0.06
SCFD1-218ENST00000556256 CLCN6P51797 869 aa14.66□□□□□ -0.06
SCFD1-218ENST00000556256 ZRANB1Q9UGI0 708 aa14.63□□□□□ -0.07
SCFD1-218ENST00000556256 ZNF579Q8NAF0 562 aaKnown RBP14.6□□□□□ -0.07
SCFD1-218ENST00000556256 DCBLD2Q96PD2 775 aa14.53□□□□□ -0.08
SCFD1-218ENST00000556256 MNX1P50219 401 aaPredicted RBP14.49□□□□□ -0.09
SCFD1-218ENST00000556256 GALR2O43603 387 aaPredicted RBP14.46□□□□□ -0.09
SCFD1-218ENST00000556256 PAK3O75914 559 aaPredicted RBP14.44□□□□□ -0.1
SCFD1-218ENST00000556256 NPM1P06748 294 aaKnown RBP eCLIP14.44□□□□□ -0.1
SCFD1-218ENST00000556256 PHF12Q96QT6 1004 aa14.42□□□□□ -0.1
SCFD1-218ENST00000556256 PROM2Q8N271 834 aa14.41□□□□□ -0.1
SCFD1-218ENST00000556256 PELP1Q8IZL8 1130 aaKnown RBP14.22□□□□□ -0.13
SCFD1-218ENST00000556256 TSPYL2Q9H2G4 693 aaPredicted RBP14.21□□□□□ -0.13
SCFD1-218ENST00000556256 POTEB2H3BUK9 544 aa14.2□□□□□ -0.14
SCFD1-218ENST00000556256 MS4A3Q96HJ5 214 aa14.2□□□□□ -0.14
SCFD1-218ENST00000556256 OTUD5Q96G74 571 aa14.17□□□□□ -0.14
SCFD1-218ENST00000556256 MIER1Q8N108 512 aa14.15□□□□□ -0.14
SCFD1-218ENST00000556256 ASTLQ6HA08 431 aaPredicted RBP14.14□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms