Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC18.44■□□□□ 0.54
PCNAP12004 AP002982.1-201ENST00000492365 877 ntBASIC18.44■□□□□ 0.54
PCNAP12004 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC18.44■□□□□ 0.54
PCNAP12004 RNF121-214ENST00000533380 870 ntTSL 3 BASIC18.44■□□□□ 0.54
PCNAP12004 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC18.44■□□□□ 0.54
PCNAP12004 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
PCNAP12004 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC18.44■□□□□ 0.54
PCNAP12004 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC18.44■□□□□ 0.54
PCNAP12004 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
PCNAP12004 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
PCNAP12004 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
PCNAP12004 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC18.44■□□□□ 0.54
PCNAP12004 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
PCNAP12004 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC18.44■□□□□ 0.54
PCNAP12004 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC18.44■□□□□ 0.54
PCNAP12004 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC18.44■□□□□ 0.54
PCNAP12004 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
PCNAP12004 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC18.44■□□□□ 0.54
PCNAP12004 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
PCNAP12004 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
PCNAP12004 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
PCNAP12004 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
PCNAP12004 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
PCNAP12004 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
PCNAP12004 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
PCNAP12004 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
PCNAP12004 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
PCNAP12004 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
PCNAP12004 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC18.43■□□□□ 0.54
PCNAP12004 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
PCNAP12004 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
PCNAP12004 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
PCNAP12004 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
PCNAP12004 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC18.43■□□□□ 0.54
PCNAP12004 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC18.43■□□□□ 0.54
PCNAP12004 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC18.43■□□□□ 0.54
PCNAP12004 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
PCNAP12004 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
PCNAP12004 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC18.43■□□□□ 0.54
PCNAP12004 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
PCNAP12004 AC090340.1-201ENST00000620778 4980 ntBASIC18.43■□□□□ 0.54
PCNAP12004 ADK-206ENST00000541550 2222 ntTSL 2 BASIC18.43■□□□□ 0.54
PCNAP12004 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC18.43■□□□□ 0.54
PCNAP12004 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
PCNAP12004 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC18.43■□□□□ 0.54
PCNAP12004 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
PCNAP12004 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC18.43■□□□□ 0.54
PCNAP12004 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
PCNAP12004 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
PCNAP12004 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
PCNAP12004 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC18.43■□□□□ 0.54
PCNAP12004 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
PCNAP12004 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC18.42■□□□□ 0.54
PCNAP12004 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
PCNAP12004 IRX1P1-201ENST00000438849 1838 ntBASIC18.42■□□□□ 0.54
PCNAP12004 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC18.42■□□□□ 0.54
PCNAP12004 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC18.42■□□□□ 0.54
PCNAP12004 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC18.42■□□□□ 0.54
PCNAP12004 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
PCNAP12004 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
PCNAP12004 SPIB-206ENST00000596074 847 ntTSL 2 BASIC18.42■□□□□ 0.54
PCNAP12004 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
PCNAP12004 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC18.42■□□□□ 0.54
PCNAP12004 AL359736.2-201ENST00000621992 437 ntBASIC18.42■□□□□ 0.54
PCNAP12004 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
PCNAP12004 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
PCNAP12004 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
PCNAP12004 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
PCNAP12004 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
PCNAP12004 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
PCNAP12004 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
PCNAP12004 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
PCNAP12004 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
PCNAP12004 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
PCNAP12004 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
PCNAP12004 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
PCNAP12004 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
PCNAP12004 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
PCNAP12004 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
PCNAP12004 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
PCNAP12004 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC18.41■□□□□ 0.54
PCNAP12004 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
PCNAP12004 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC18.41■□□□□ 0.54
PCNAP12004 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC18.41■□□□□ 0.54
PCNAP12004 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
PCNAP12004 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC18.41■□□□□ 0.54
PCNAP12004 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
PCNAP12004 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC18.41■□□□□ 0.54
PCNAP12004 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC18.41■□□□□ 0.54
PCNAP12004 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC18.41■□□□□ 0.54
PCNAP12004 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
PCNAP12004 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
PCNAP12004 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
PCNAP12004 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC18.41■□□□□ 0.54
PCNAP12004 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
PCNAP12004 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
PCNAP12004 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
PCNAP12004 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
PCNAP12004 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
PCNAP12004 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC18.41■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms