Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC15.43■□□□□ 0.06
TRAV40A0A0B4J280 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC15.43■□□□□ 0.06
TRAV40A0A0B4J280 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC15.43■□□□□ 0.06
TRAV40A0A0B4J280 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
TRAV40A0A0B4J280 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
TRAV40A0A0B4J280 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC15.43■□□□□ 0.06
TRAV40A0A0B4J280 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
TRAV40A0A0B4J280 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC15.43■□□□□ 0.06
TRAV40A0A0B4J280 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC15.43■□□□□ 0.06
TRAV40A0A0B4J280 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
TRAV40A0A0B4J280 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
TRAV40A0A0B4J280 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
TRAV40A0A0B4J280 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
TRAV40A0A0B4J280 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC15.43■□□□□ 0.06
TRAV40A0A0B4J280 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
TRAV40A0A0B4J280 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC15.43■□□□□ 0.06
TRAV40A0A0B4J280 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC15.42■□□□□ 0.06
TRAV40A0A0B4J280 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC15.42■□□□□ 0.06
TRAV40A0A0B4J280 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
TRAV40A0A0B4J280 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
TRAV40A0A0B4J280 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC15.42■□□□□ 0.06
TRAV40A0A0B4J280 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
TRAV40A0A0B4J280 GAS2L1P1-201ENST00000420145 1480 ntBASIC15.42■□□□□ 0.06
TRAV40A0A0B4J280 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
TRAV40A0A0B4J280 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC15.42■□□□□ 0.06
TRAV40A0A0B4J280 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
TRAV40A0A0B4J280 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
TRAV40A0A0B4J280 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC15.42■□□□□ 0.06
TRAV40A0A0B4J280 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
TRAV40A0A0B4J280 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
TRAV40A0A0B4J280 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC15.42■□□□□ 0.06
TRAV40A0A0B4J280 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC15.42■□□□□ 0.06
TRAV40A0A0B4J280 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC15.42■□□□□ 0.06
TRAV40A0A0B4J280 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC15.42■□□□□ 0.06
TRAV40A0A0B4J280 CBFB-203ENST00000561924 584 ntTSL 5 BASIC15.42■□□□□ 0.06
TRAV40A0A0B4J280 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
TRAV40A0A0B4J280 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC15.42■□□□□ 0.06
TRAV40A0A0B4J280 NT5C-210ENST00000582160 860 ntTSL 2 BASIC15.42■□□□□ 0.06
TRAV40A0A0B4J280 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC15.42■□□□□ 0.06
TRAV40A0A0B4J280 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC15.42■□□□□ 0.06
TRAV40A0A0B4J280 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC15.42■□□□□ 0.06
TRAV40A0A0B4J280 MYC-208ENST00000641036 567 ntBASIC15.42■□□□□ 0.06
TRAV40A0A0B4J280 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
TRAV40A0A0B4J280 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC15.42■□□□□ 0.06
TRAV40A0A0B4J280 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
TRAV40A0A0B4J280 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
TRAV40A0A0B4J280 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC15.42■□□□□ 0.06
TRAV40A0A0B4J280 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC15.42■□□□□ 0.06
TRAV40A0A0B4J280 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC15.42■□□□□ 0.06
TRAV40A0A0B4J280 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
TRAV40A0A0B4J280 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
TRAV40A0A0B4J280 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC15.42■□□□□ 0.06
TRAV40A0A0B4J280 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
TRAV40A0A0B4J280 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
TRAV40A0A0B4J280 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
TRAV40A0A0B4J280 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC15.41■□□□□ 0.06
TRAV40A0A0B4J280 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TRAV40A0A0B4J280 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TRAV40A0A0B4J280 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
TRAV40A0A0B4J280 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TRAV40A0A0B4J280 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC15.41■□□□□ 0.06
TRAV40A0A0B4J280 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
TRAV40A0A0B4J280 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TRAV40A0A0B4J280 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC15.41■□□□□ 0.06
TRAV40A0A0B4J280 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC15.41■□□□□ 0.06
TRAV40A0A0B4J280 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC15.41■□□□□ 0.06
TRAV40A0A0B4J280 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC15.41■□□□□ 0.06
TRAV40A0A0B4J280 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC15.41■□□□□ 0.06
TRAV40A0A0B4J280 ETFA-216ENST00000560726 942 ntTSL 3 BASIC15.41■□□□□ 0.06
TRAV40A0A0B4J280 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC15.41■□□□□ 0.06
TRAV40A0A0B4J280 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC15.41■□□□□ 0.06
TRAV40A0A0B4J280 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC15.41■□□□□ 0.06
TRAV40A0A0B4J280 TP73-202ENST00000354437 2140 ntTSL 5 BASIC15.41■□□□□ 0.06
TRAV40A0A0B4J280 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TRAV40A0A0B4J280 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TRAV40A0A0B4J280 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC15.41■□□□□ 0.06
TRAV40A0A0B4J280 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TRAV40A0A0B4J280 AC125437.2-201ENST00000625180 2167 ntBASIC15.41■□□□□ 0.06
TRAV40A0A0B4J280 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
TRAV40A0A0B4J280 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC15.4■□□□□ 0.06
TRAV40A0A0B4J280 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
TRAV40A0A0B4J280 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
TRAV40A0A0B4J280 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TRAV40A0A0B4J280 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
TRAV40A0A0B4J280 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC15.4■□□□□ 0.06
TRAV40A0A0B4J280 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
TRAV40A0A0B4J280 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC15.4■□□□□ 0.06
TRAV40A0A0B4J280 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC15.4■□□□□ 0.06
TRAV40A0A0B4J280 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
TRAV40A0A0B4J280 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
TRAV40A0A0B4J280 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC15.4■□□□□ 0.06
TRAV40A0A0B4J280 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
TRAV40A0A0B4J280 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC15.4■□□□□ 0.06
TRAV40A0A0B4J280 NEK4P2-201ENST00000580004 1012 ntBASIC15.4■□□□□ 0.06
TRAV40A0A0B4J280 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TRAV40A0A0B4J280 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TRAV40A0A0B4J280 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC15.4■□□□□ 0.06
TRAV40A0A0B4J280 CR769767.2-201ENST00000622735 460 ntBASIC15.4■□□□□ 0.06
TRAV40A0A0B4J280 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC15.4■□□□□ 0.06
TRAV40A0A0B4J280 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms