Protein–RNA interactions for Protein: Q9Y2X8

UBE2D4, Ubiquitin-conjugating enzyme E2 D4, humanhuman

Predictions only

Length 147 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D4Q9Y2X8 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
UBE2D4Q9Y2X8 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC13.21□□□□□ -0.29
UBE2D4Q9Y2X8 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC13.21□□□□□ -0.29
UBE2D4Q9Y2X8 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
UBE2D4Q9Y2X8 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
UBE2D4Q9Y2X8 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC13.21□□□□□ -0.29
UBE2D4Q9Y2X8 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
UBE2D4Q9Y2X8 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.29
UBE2D4Q9Y2X8 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
UBE2D4Q9Y2X8 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
UBE2D4Q9Y2X8 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC13.21□□□□□ -0.29
UBE2D4Q9Y2X8 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
UBE2D4Q9Y2X8 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
UBE2D4Q9Y2X8 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC13.21□□□□□ -0.29
UBE2D4Q9Y2X8 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
UBE2D4Q9Y2X8 BX276092.2-201ENST00000417668 665 ntBASIC13.21□□□□□ -0.29
UBE2D4Q9Y2X8 NME6-213ENST00000451657 871 ntTSL 2 BASIC13.21□□□□□ -0.29
UBE2D4Q9Y2X8 KRT18P16-201ENST00000510337 1294 ntBASIC13.21□□□□□ -0.29
UBE2D4Q9Y2X8 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC13.21□□□□□ -0.29
UBE2D4Q9Y2X8 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC13.21□□□□□ -0.29
UBE2D4Q9Y2X8 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC13.21□□□□□ -0.29
UBE2D4Q9Y2X8 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC13.21□□□□□ -0.29
UBE2D4Q9Y2X8 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
UBE2D4Q9Y2X8 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
UBE2D4Q9Y2X8 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC13.21□□□□□ -0.3
UBE2D4Q9Y2X8 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
UBE2D4Q9Y2X8 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
UBE2D4Q9Y2X8 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
UBE2D4Q9Y2X8 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
UBE2D4Q9Y2X8 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC13.21□□□□□ -0.3
UBE2D4Q9Y2X8 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.3
UBE2D4Q9Y2X8 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
UBE2D4Q9Y2X8 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC13.21□□□□□ -0.3
UBE2D4Q9Y2X8 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
UBE2D4Q9Y2X8 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
UBE2D4Q9Y2X8 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
UBE2D4Q9Y2X8 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
UBE2D4Q9Y2X8 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
UBE2D4Q9Y2X8 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
UBE2D4Q9Y2X8 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC13.2□□□□□ -0.3
UBE2D4Q9Y2X8 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
UBE2D4Q9Y2X8 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
UBE2D4Q9Y2X8 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
UBE2D4Q9Y2X8 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
UBE2D4Q9Y2X8 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC13.2□□□□□ -0.3
UBE2D4Q9Y2X8 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
UBE2D4Q9Y2X8 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
UBE2D4Q9Y2X8 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
UBE2D4Q9Y2X8 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
UBE2D4Q9Y2X8 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
UBE2D4Q9Y2X8 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
UBE2D4Q9Y2X8 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC13.2□□□□□ -0.3
UBE2D4Q9Y2X8 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
UBE2D4Q9Y2X8 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC13.2□□□□□ -0.3
UBE2D4Q9Y2X8 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
UBE2D4Q9Y2X8 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC13.2□□□□□ -0.3
UBE2D4Q9Y2X8 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC13.2□□□□□ -0.3
UBE2D4Q9Y2X8 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
UBE2D4Q9Y2X8 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC13.2□□□□□ -0.3
UBE2D4Q9Y2X8 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC13.2□□□□□ -0.3
UBE2D4Q9Y2X8 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
UBE2D4Q9Y2X8 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
UBE2D4Q9Y2X8 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC13.2□□□□□ -0.3
UBE2D4Q9Y2X8 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
UBE2D4Q9Y2X8 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC13.2□□□□□ -0.3
UBE2D4Q9Y2X8 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
UBE2D4Q9Y2X8 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
UBE2D4Q9Y2X8 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
UBE2D4Q9Y2X8 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
UBE2D4Q9Y2X8 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
UBE2D4Q9Y2X8 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
UBE2D4Q9Y2X8 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
UBE2D4Q9Y2X8 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC13.2□□□□□ -0.3
UBE2D4Q9Y2X8 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
UBE2D4Q9Y2X8 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC13.2□□□□□ -0.3
UBE2D4Q9Y2X8 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
UBE2D4Q9Y2X8 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
UBE2D4Q9Y2X8 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC13.19□□□□□ -0.3
UBE2D4Q9Y2X8 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
UBE2D4Q9Y2X8 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC13.19□□□□□ -0.3
UBE2D4Q9Y2X8 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC13.19□□□□□ -0.3
UBE2D4Q9Y2X8 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC13.19□□□□□ -0.3
UBE2D4Q9Y2X8 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC13.19□□□□□ -0.3
UBE2D4Q9Y2X8 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
UBE2D4Q9Y2X8 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
UBE2D4Q9Y2X8 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC13.19□□□□□ -0.3
UBE2D4Q9Y2X8 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
UBE2D4Q9Y2X8 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
UBE2D4Q9Y2X8 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
UBE2D4Q9Y2X8 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC13.19□□□□□ -0.3
UBE2D4Q9Y2X8 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC13.19□□□□□ -0.3
UBE2D4Q9Y2X8 TUBB8P6-201ENST00000436895 1288 ntBASIC13.19□□□□□ -0.3
UBE2D4Q9Y2X8 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC13.19□□□□□ -0.3
UBE2D4Q9Y2X8 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC13.19□□□□□ -0.3
UBE2D4Q9Y2X8 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
UBE2D4Q9Y2X8 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
UBE2D4Q9Y2X8 MARS-234ENST00000630571 216 ntTSL 5 BASIC13.19□□□□□ -0.3
UBE2D4Q9Y2X8 MARS-235ENST00000630803 183 ntTSL 3 BASIC13.19□□□□□ -0.3
UBE2D4Q9Y2X8 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC13.19□□□□□ -0.3
UBE2D4Q9Y2X8 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms