Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SIX4Q9UIU6 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SIX4Q9UIU6 AL137013.1-201ENST00000432946 1228 ntBASIC20.28■□□□□ 0.84
SIX4Q9UIU6 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SIX4Q9UIU6 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC20.28■□□□□ 0.84
SIX4Q9UIU6 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC20.28■□□□□ 0.84
SIX4Q9UIU6 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
SIX4Q9UIU6 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC20.28■□□□□ 0.84
SIX4Q9UIU6 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SIX4Q9UIU6 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SIX4Q9UIU6 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC20.28■□□□□ 0.84
SIX4Q9UIU6 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
SIX4Q9UIU6 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SIX4Q9UIU6 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC20.28■□□□□ 0.84
SIX4Q9UIU6 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC20.28■□□□□ 0.84
SIX4Q9UIU6 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
SIX4Q9UIU6 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
SIX4Q9UIU6 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC20.27■□□□□ 0.84
SIX4Q9UIU6 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SIX4Q9UIU6 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC20.27■□□□□ 0.84
SIX4Q9UIU6 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SIX4Q9UIU6 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SIX4Q9UIU6 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
SIX4Q9UIU6 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
SIX4Q9UIU6 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
SIX4Q9UIU6 KRT18P21-201ENST00000515767 1272 ntBASIC20.27■□□□□ 0.84
SIX4Q9UIU6 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC20.27■□□□□ 0.84
SIX4Q9UIU6 TK2-213ENST00000563369 882 ntTSL 5 BASIC20.27■□□□□ 0.84
SIX4Q9UIU6 RN7SL850P-201ENST00000579959 291 ntBASIC20.27■□□□□ 0.84
SIX4Q9UIU6 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SIX4Q9UIU6 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC20.27■□□□□ 0.84
SIX4Q9UIU6 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SIX4Q9UIU6 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
SIX4Q9UIU6 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
SIX4Q9UIU6 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
SIX4Q9UIU6 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
SIX4Q9UIU6 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.83
SIX4Q9UIU6 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC20.26■□□□□ 0.83
SIX4Q9UIU6 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
SIX4Q9UIU6 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
SIX4Q9UIU6 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC20.26■□□□□ 0.83
SIX4Q9UIU6 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
SIX4Q9UIU6 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SIX4Q9UIU6 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
SIX4Q9UIU6 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC20.26■□□□□ 0.83
SIX4Q9UIU6 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC20.26■□□□□ 0.83
SIX4Q9UIU6 FAM210CP-201ENST00000445714 574 ntBASIC20.26■□□□□ 0.83
SIX4Q9UIU6 CFL2-205ENST00000555765 632 ntTSL 2 BASIC20.26■□□□□ 0.83
SIX4Q9UIU6 RBM42-202ENST00000586618 771 ntTSL 3 BASIC20.26■□□□□ 0.83
SIX4Q9UIU6 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC20.26■□□□□ 0.83
SIX4Q9UIU6 CR769767.2-201ENST00000622735 460 ntBASIC20.26■□□□□ 0.83
SIX4Q9UIU6 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC20.26■□□□□ 0.83
SIX4Q9UIU6 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
SIX4Q9UIU6 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
SIX4Q9UIU6 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
SIX4Q9UIU6 RCC2P3-201ENST00000418112 1537 ntBASIC20.26■□□□□ 0.83
SIX4Q9UIU6 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SIX4Q9UIU6 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SIX4Q9UIU6 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC20.26■□□□□ 0.83
SIX4Q9UIU6 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
SIX4Q9UIU6 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SIX4Q9UIU6 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SIX4Q9UIU6 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SIX4Q9UIU6 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SIX4Q9UIU6 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC20.25■□□□□ 0.83
SIX4Q9UIU6 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC20.25■□□□□ 0.83
SIX4Q9UIU6 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
SIX4Q9UIU6 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC20.25■□□□□ 0.83
SIX4Q9UIU6 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
SIX4Q9UIU6 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SIX4Q9UIU6 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
SIX4Q9UIU6 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SIX4Q9UIU6 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SIX4Q9UIU6 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC20.25■□□□□ 0.83
SIX4Q9UIU6 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
SIX4Q9UIU6 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SIX4Q9UIU6 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC20.25■□□□□ 0.83
SIX4Q9UIU6 AC068587.9-201ENST00000641814 219 ntBASIC20.25■□□□□ 0.83
SIX4Q9UIU6 AC092865.7-201ENST00000641832 219 ntBASIC20.25■□□□□ 0.83
SIX4Q9UIU6 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC20.25■□□□□ 0.83
SIX4Q9UIU6 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
SIX4Q9UIU6 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SIX4Q9UIU6 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
SIX4Q9UIU6 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
SIX4Q9UIU6 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
SIX4Q9UIU6 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
SIX4Q9UIU6 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SIX4Q9UIU6 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
SIX4Q9UIU6 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SIX4Q9UIU6 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
SIX4Q9UIU6 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SIX4Q9UIU6 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
SIX4Q9UIU6 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SIX4Q9UIU6 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SIX4Q9UIU6 USP39-202ENST00000409025 1946 ntTSL 5 BASIC20.24■□□□□ 0.83
SIX4Q9UIU6 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
SIX4Q9UIU6 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SIX4Q9UIU6 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC20.24■□□□□ 0.83
SIX4Q9UIU6 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SIX4Q9UIU6 ILF2-202ENST00000368681 726 ntTSL 2 BASIC20.24■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms