Protein–RNA interactions for Protein: Q9P244

LRFN1, Leucine-rich repeat and fibronectin type III domain-containing protein 1, humanhuman

Predictions only

Length 771 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN1Q9P244 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LRFN1Q9P244 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC17.4■□□□□ 0.38
LRFN1Q9P244 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LRFN1Q9P244 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LRFN1Q9P244 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
LRFN1Q9P244 COPE-203ENST00000351079 907 ntTSL 2 BASIC17.4■□□□□ 0.38
LRFN1Q9P244 GUK1-204ENST00000366721 689 ntTSL 3 BASIC17.4■□□□□ 0.38
LRFN1Q9P244 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC17.4■□□□□ 0.38
LRFN1Q9P244 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LRFN1Q9P244 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LRFN1Q9P244 AP000523.1-201ENST00000398242 1049 ntBASIC17.4■□□□□ 0.38
LRFN1Q9P244 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC17.4■□□□□ 0.38
LRFN1Q9P244 FAM8A6P-201ENST00000407496 1135 ntBASIC17.4■□□□□ 0.38
LRFN1Q9P244 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC17.4■□□□□ 0.38
LRFN1Q9P244 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
LRFN1Q9P244 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC17.4■□□□□ 0.38
LRFN1Q9P244 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC17.4■□□□□ 0.38
LRFN1Q9P244 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
LRFN1Q9P244 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC17.4■□□□□ 0.38
LRFN1Q9P244 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LRFN1Q9P244 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LRFN1Q9P244 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC17.4■□□□□ 0.38
LRFN1Q9P244 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC17.4■□□□□ 0.38
LRFN1Q9P244 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LRFN1Q9P244 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
LRFN1Q9P244 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LRFN1Q9P244 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LRFN1Q9P244 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LRFN1Q9P244 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
LRFN1Q9P244 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC17.4■□□□□ 0.38
LRFN1Q9P244 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LRFN1Q9P244 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
LRFN1Q9P244 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
LRFN1Q9P244 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
LRFN1Q9P244 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
LRFN1Q9P244 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC17.39■□□□□ 0.38
LRFN1Q9P244 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.38
LRFN1Q9P244 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.38
LRFN1Q9P244 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC17.39■□□□□ 0.37
LRFN1Q9P244 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LRFN1Q9P244 AC125437.2-201ENST00000625180 2167 ntBASIC17.39■□□□□ 0.37
LRFN1Q9P244 GAS2L1P1-201ENST00000420145 1480 ntBASIC17.39■□□□□ 0.37
LRFN1Q9P244 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LRFN1Q9P244 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC17.39■□□□□ 0.37
LRFN1Q9P244 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC17.39■□□□□ 0.37
LRFN1Q9P244 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LRFN1Q9P244 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC17.39■□□□□ 0.37
LRFN1Q9P244 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
LRFN1Q9P244 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC17.39■□□□□ 0.37
LRFN1Q9P244 AL023973.1-201ENST00000624619 620 ntBASIC17.39■□□□□ 0.37
LRFN1Q9P244 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
LRFN1Q9P244 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
LRFN1Q9P244 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC17.39■□□□□ 0.37
LRFN1Q9P244 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LRFN1Q9P244 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC17.39■□□□□ 0.37
LRFN1Q9P244 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LRFN1Q9P244 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC17.39■□□□□ 0.37
LRFN1Q9P244 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LRFN1Q9P244 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
LRFN1Q9P244 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC17.38■□□□□ 0.37
LRFN1Q9P244 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LRFN1Q9P244 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
LRFN1Q9P244 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LRFN1Q9P244 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
LRFN1Q9P244 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
LRFN1Q9P244 Telomerase-vert.1-201ENST00000363312 438 ntBASIC17.38■□□□□ 0.37
LRFN1Q9P244 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LRFN1Q9P244 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
LRFN1Q9P244 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC17.38■□□□□ 0.37
LRFN1Q9P244 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LRFN1Q9P244 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC17.38■□□□□ 0.37
LRFN1Q9P244 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC17.38■□□□□ 0.37
LRFN1Q9P244 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LRFN1Q9P244 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
LRFN1Q9P244 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC17.38■□□□□ 0.37
LRFN1Q9P244 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC17.38■□□□□ 0.37
LRFN1Q9P244 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LRFN1Q9P244 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC17.38■□□□□ 0.37
LRFN1Q9P244 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
LRFN1Q9P244 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
LRFN1Q9P244 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC17.38■□□□□ 0.37
LRFN1Q9P244 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LRFN1Q9P244 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
LRFN1Q9P244 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC17.38■□□□□ 0.37
LRFN1Q9P244 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
LRFN1Q9P244 TP73-202ENST00000354437 2140 ntTSL 5 BASIC17.38■□□□□ 0.37
LRFN1Q9P244 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC17.38■□□□□ 0.37
LRFN1Q9P244 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC17.38■□□□□ 0.37
LRFN1Q9P244 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC17.38■□□□□ 0.37
LRFN1Q9P244 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
LRFN1Q9P244 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC17.37■□□□□ 0.37
LRFN1Q9P244 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
LRFN1Q9P244 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC17.37■□□□□ 0.37
LRFN1Q9P244 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
LRFN1Q9P244 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC17.37■□□□□ 0.37
LRFN1Q9P244 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC17.37■□□□□ 0.37
LRFN1Q9P244 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
LRFN1Q9P244 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC17.37■□□□□ 0.37
LRFN1Q9P244 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC17.37■□□□□ 0.37
LRFN1Q9P244 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms