Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
PPP4R4Q6NUP7 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC18.17■□□□□ 0.5
PPP4R4Q6NUP7 TSPY20P-201ENST00000450910 630 ntBASIC18.17■□□□□ 0.5
PPP4R4Q6NUP7 C2orf69P4-201ENST00000565394 541 ntBASIC18.17■□□□□ 0.5
PPP4R4Q6NUP7 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC18.17■□□□□ 0.5
PPP4R4Q6NUP7 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC18.17■□□□□ 0.5
PPP4R4Q6NUP7 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC18.17■□□□□ 0.5
PPP4R4Q6NUP7 MYC-209ENST00000641252 345 ntBASIC18.17■□□□□ 0.5
PPP4R4Q6NUP7 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC18.17■□□□□ 0.5
PPP4R4Q6NUP7 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC18.17■□□□□ 0.5
PPP4R4Q6NUP7 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
PPP4R4Q6NUP7 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PPP4R4Q6NUP7 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC18.17■□□□□ 0.5
PPP4R4Q6NUP7 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC18.17■□□□□ 0.5
PPP4R4Q6NUP7 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PPP4R4Q6NUP7 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
PPP4R4Q6NUP7 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PPP4R4Q6NUP7 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC18.17■□□□□ 0.5
PPP4R4Q6NUP7 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
PPP4R4Q6NUP7 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PPP4R4Q6NUP7 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC18.17■□□□□ 0.5
PPP4R4Q6NUP7 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC18.17■□□□□ 0.5
PPP4R4Q6NUP7 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PPP4R4Q6NUP7 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PPP4R4Q6NUP7 AC092368.3-202ENST00000574180 1591 ntBASIC18.17■□□□□ 0.5
PPP4R4Q6NUP7 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PPP4R4Q6NUP7 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
PPP4R4Q6NUP7 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
PPP4R4Q6NUP7 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC18.16■□□□□ 0.5
PPP4R4Q6NUP7 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
PPP4R4Q6NUP7 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC18.16■□□□□ 0.5
PPP4R4Q6NUP7 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC18.16■□□□□ 0.5
PPP4R4Q6NUP7 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
PPP4R4Q6NUP7 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PPP4R4Q6NUP7 TEX21P-204ENST00000641479 1693 ntBASIC18.16■□□□□ 0.5
PPP4R4Q6NUP7 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
PPP4R4Q6NUP7 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PPP4R4Q6NUP7 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
PPP4R4Q6NUP7 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PPP4R4Q6NUP7 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
PPP4R4Q6NUP7 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
PPP4R4Q6NUP7 FAM201B-201ENST00000458407 597 ntBASIC18.16■□□□□ 0.5
PPP4R4Q6NUP7 MIR4651-201ENST00000582622 73 ntBASIC18.16■□□□□ 0.5
PPP4R4Q6NUP7 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC18.16■□□□□ 0.5
PPP4R4Q6NUP7 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
PPP4R4Q6NUP7 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
PPP4R4Q6NUP7 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC18.16■□□□□ 0.5
PPP4R4Q6NUP7 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC18.16■□□□□ 0.5
PPP4R4Q6NUP7 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PPP4R4Q6NUP7 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC18.16■□□□□ 0.5
PPP4R4Q6NUP7 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC18.16■□□□□ 0.5
PPP4R4Q6NUP7 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC18.16■□□□□ 0.5
PPP4R4Q6NUP7 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
PPP4R4Q6NUP7 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
PPP4R4Q6NUP7 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC18.16■□□□□ 0.5
PPP4R4Q6NUP7 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
PPP4R4Q6NUP7 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC18.16■□□□□ 0.5
PPP4R4Q6NUP7 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PPP4R4Q6NUP7 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PPP4R4Q6NUP7 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC18.16■□□□□ 0.5
PPP4R4Q6NUP7 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
PPP4R4Q6NUP7 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
PPP4R4Q6NUP7 CRK-204ENST00000574295 1391 ntTSL 5 BASIC18.16■□□□□ 0.5
PPP4R4Q6NUP7 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PPP4R4Q6NUP7 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PPP4R4Q6NUP7 NFIC-211ENST00000641145 8399 ntBASIC18.15■□□□□ 0.5
PPP4R4Q6NUP7 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC18.15■□□□□ 0.5
PPP4R4Q6NUP7 FP475955.4-201ENST00000623131 1990 ntBASIC18.15■□□□□ 0.5
PPP4R4Q6NUP7 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PPP4R4Q6NUP7 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PPP4R4Q6NUP7 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PPP4R4Q6NUP7 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
PPP4R4Q6NUP7 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
PPP4R4Q6NUP7 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC18.15■□□□□ 0.5
PPP4R4Q6NUP7 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC18.15■□□□□ 0.5
PPP4R4Q6NUP7 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC18.15■□□□□ 0.5
PPP4R4Q6NUP7 BRWD1-AS2-201ENST00000603064 1028 ntBASIC18.15■□□□□ 0.5
PPP4R4Q6NUP7 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
PPP4R4Q6NUP7 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC18.15■□□□□ 0.5
PPP4R4Q6NUP7 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PPP4R4Q6NUP7 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
PPP4R4Q6NUP7 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PPP4R4Q6NUP7 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC18.15■□□□□ 0.5
PPP4R4Q6NUP7 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PPP4R4Q6NUP7 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
PPP4R4Q6NUP7 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PPP4R4Q6NUP7 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
PPP4R4Q6NUP7 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
PPP4R4Q6NUP7 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
PPP4R4Q6NUP7 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PPP4R4Q6NUP7 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC18.15■□□□□ 0.5
PPP4R4Q6NUP7 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PPP4R4Q6NUP7 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC18.15■□□□□ 0.5
PPP4R4Q6NUP7 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
PPP4R4Q6NUP7 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PPP4R4Q6NUP7 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC18.15■□□□□ 0.5
PPP4R4Q6NUP7 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
PPP4R4Q6NUP7 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
PPP4R4Q6NUP7 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
PPP4R4Q6NUP7 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC18.14■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms