Protein–RNA interactions for Protein: Q6A162

KRT40, Keratin, type I cytoskeletal 40, humanhuman

Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT40Q6A162 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
KRT40Q6A162 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC21.97■■□□□ 1.11
KRT40Q6A162 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
KRT40Q6A162 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
KRT40Q6A162 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
KRT40Q6A162 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC21.97■■□□□ 1.11
KRT40Q6A162 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
KRT40Q6A162 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
KRT40Q6A162 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
KRT40Q6A162 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
KRT40Q6A162 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
KRT40Q6A162 DERL1-203ENST00000419562 918 ntTSL 2 BASIC21.97■■□□□ 1.11
KRT40Q6A162 SAPCD2P4-201ENST00000424595 1171 ntBASIC21.97■■□□□ 1.11
KRT40Q6A162 AC008040.2-201ENST00000461049 708 ntBASIC21.97■■□□□ 1.11
KRT40Q6A162 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC21.97■■□□□ 1.11
KRT40Q6A162 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC21.97■■□□□ 1.11
KRT40Q6A162 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC21.97■■□□□ 1.11
KRT40Q6A162 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
KRT40Q6A162 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC21.97■■□□□ 1.11
KRT40Q6A162 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC21.97■■□□□ 1.11
KRT40Q6A162 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
KRT40Q6A162 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC21.96■■□□□ 1.11
KRT40Q6A162 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
KRT40Q6A162 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
KRT40Q6A162 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC21.96■■□□□ 1.11
KRT40Q6A162 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC21.96■■□□□ 1.11
KRT40Q6A162 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC21.96■■□□□ 1.11
KRT40Q6A162 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
KRT40Q6A162 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
KRT40Q6A162 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC21.96■■□□□ 1.11
KRT40Q6A162 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
KRT40Q6A162 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC21.96■■□□□ 1.11
KRT40Q6A162 WDR88-203ENST00000592765 651 ntTSL 5 BASIC21.96■■□□□ 1.11
KRT40Q6A162 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC21.96■■□□□ 1.11
KRT40Q6A162 AL031985.4-201ENST00000642138 673 ntBASIC21.96■■□□□ 1.11
KRT40Q6A162 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
KRT40Q6A162 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC21.96■■□□□ 1.11
KRT40Q6A162 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
KRT40Q6A162 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
KRT40Q6A162 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.11
KRT40Q6A162 STX6-204ENST00000542060 4809 ntTSL 2 BASIC21.95■■□□□ 1.1
KRT40Q6A162 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
KRT40Q6A162 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
KRT40Q6A162 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
KRT40Q6A162 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
KRT40Q6A162 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC21.95■■□□□ 1.1
KRT40Q6A162 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
KRT40Q6A162 AC004951.3-201ENST00000418645 1148 ntBASIC21.95■■□□□ 1.1
KRT40Q6A162 FAM197Y1-201ENST00000421178 764 ntBASIC21.95■■□□□ 1.1
KRT40Q6A162 AC011506.1-201ENST00000474329 610 ntBASIC21.95■■□□□ 1.1
KRT40Q6A162 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC21.95■■□□□ 1.1
KRT40Q6A162 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC21.95■■□□□ 1.1
KRT40Q6A162 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC21.95■■□□□ 1.1
KRT40Q6A162 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC21.95■■□□□ 1.1
KRT40Q6A162 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC21.95■■□□□ 1.1
KRT40Q6A162 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC21.95■■□□□ 1.1
KRT40Q6A162 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
KRT40Q6A162 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
KRT40Q6A162 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
KRT40Q6A162 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
KRT40Q6A162 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC21.94■■□□□ 1.1
KRT40Q6A162 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC21.94■■□□□ 1.1
KRT40Q6A162 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC21.94■■□□□ 1.1
KRT40Q6A162 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC21.94■■□□□ 1.1
KRT40Q6A162 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
KRT40Q6A162 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC21.94■■□□□ 1.1
KRT40Q6A162 AC026271.3-201ENST00000571884 352 ntBASIC21.94■■□□□ 1.1
KRT40Q6A162 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC21.94■■□□□ 1.1
KRT40Q6A162 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
KRT40Q6A162 AL590326.2-201ENST00000625139 305 ntBASIC21.94■■□□□ 1.1
KRT40Q6A162 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
KRT40Q6A162 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC21.94■■□□□ 1.1
KRT40Q6A162 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC21.94■■□□□ 1.1
KRT40Q6A162 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC21.94■■□□□ 1.1
KRT40Q6A162 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
KRT40Q6A162 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
KRT40Q6A162 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC21.94■■□□□ 1.1
KRT40Q6A162 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
KRT40Q6A162 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
KRT40Q6A162 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
KRT40Q6A162 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC21.93■■□□□ 1.1
KRT40Q6A162 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC21.93■■□□□ 1.1
KRT40Q6A162 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
KRT40Q6A162 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
KRT40Q6A162 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
KRT40Q6A162 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
KRT40Q6A162 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC21.93■■□□□ 1.1
KRT40Q6A162 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC21.93■■□□□ 1.1
KRT40Q6A162 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
KRT40Q6A162 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC21.93■■□□□ 1.1
KRT40Q6A162 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC21.93■■□□□ 1.1
KRT40Q6A162 AP003071.4-201ENST00000562276 1284 ntBASIC21.93■■□□□ 1.1
KRT40Q6A162 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
KRT40Q6A162 AC026471.5-201ENST00000615068 467 ntBASIC21.93■■□□□ 1.1
KRT40Q6A162 AC011298.2-201ENST00000617989 482 ntBASIC21.93■■□□□ 1.1
KRT40Q6A162 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC21.93■■□□□ 1.1
KRT40Q6A162 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC21.93■■□□□ 1.1
KRT40Q6A162 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC21.93■■□□□ 1.1
KRT40Q6A162 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
KRT40Q6A162 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 17.6 ms