Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC15.46■□□□□ 0.07
CDX1P47902 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC15.46■□□□□ 0.07
CDX1P47902 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
CDX1P47902 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
CDX1P47902 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC15.46■□□□□ 0.07
CDX1P47902 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.07
CDX1P47902 RHOD-202ENST00000532559 538 ntTSL 3 BASIC15.46■□□□□ 0.07
CDX1P47902 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
CDX1P47902 AC124016.1-201ENST00000609552 612 ntBASIC15.46■□□□□ 0.07
CDX1P47902 AL023875.1-201ENST00000640777 796 ntBASIC15.46■□□□□ 0.07
CDX1P47902 BCL2-203ENST00000589955 5011 ntBASIC15.46■□□□□ 0.07
CDX1P47902 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC15.46■□□□□ 0.07
CDX1P47902 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
CDX1P47902 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
CDX1P47902 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
CDX1P47902 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.07
CDX1P47902 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
CDX1P47902 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
CDX1P47902 HCG11-201ENST00000411553 5696 ntBASIC15.46■□□□□ 0.07
CDX1P47902 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.06
CDX1P47902 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC15.46■□□□□ 0.06
CDX1P47902 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
CDX1P47902 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
CDX1P47902 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC15.46■□□□□ 0.06
CDX1P47902 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC15.45■□□□□ 0.06
CDX1P47902 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
CDX1P47902 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC15.45■□□□□ 0.06
CDX1P47902 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
CDX1P47902 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC15.45■□□□□ 0.06
CDX1P47902 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
CDX1P47902 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC15.45■□□□□ 0.06
CDX1P47902 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC15.45■□□□□ 0.06
CDX1P47902 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
CDX1P47902 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC15.45■□□□□ 0.06
CDX1P47902 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC15.45■□□□□ 0.06
CDX1P47902 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
CDX1P47902 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
CDX1P47902 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
CDX1P47902 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC15.45■□□□□ 0.06
CDX1P47902 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC15.45■□□□□ 0.06
CDX1P47902 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC15.45■□□□□ 0.06
CDX1P47902 SPIB-206ENST00000596074 847 ntTSL 2 BASIC15.45■□□□□ 0.06
CDX1P47902 AC110285.5-201ENST00000611501 352 ntBASIC15.45■□□□□ 0.06
CDX1P47902 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
CDX1P47902 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC15.45■□□□□ 0.06
CDX1P47902 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
CDX1P47902 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
CDX1P47902 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
CDX1P47902 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
CDX1P47902 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
CDX1P47902 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
CDX1P47902 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC15.45■□□□□ 0.06
CDX1P47902 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
CDX1P47902 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
CDX1P47902 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC15.45■□□□□ 0.06
CDX1P47902 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC15.45■□□□□ 0.06
CDX1P47902 AC124067.4-201ENST00000519691 2379 ntBASIC15.44■□□□□ 0.06
CDX1P47902 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
CDX1P47902 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC15.44■□□□□ 0.06
CDX1P47902 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC15.44■□□□□ 0.06
CDX1P47902 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC15.44■□□□□ 0.06
CDX1P47902 PTGES2-AS1-201ENST00000443493 2100 ntBASIC15.44■□□□□ 0.06
CDX1P47902 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC15.44■□□□□ 0.06
CDX1P47902 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
CDX1P47902 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC15.44■□□□□ 0.06
CDX1P47902 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC15.44■□□□□ 0.06
CDX1P47902 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC15.44■□□□□ 0.06
CDX1P47902 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
CDX1P47902 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC15.44■□□□□ 0.06
CDX1P47902 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
CDX1P47902 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
CDX1P47902 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC15.44■□□□□ 0.06
CDX1P47902 AC009113.1-201ENST00000570267 2443 ntBASIC15.44■□□□□ 0.06
CDX1P47902 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
CDX1P47902 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC15.44■□□□□ 0.06
CDX1P47902 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
CDX1P47902 TREX2-204ENST00000370212 861 ntTSL 5 BASIC15.44■□□□□ 0.06
CDX1P47902 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
CDX1P47902 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
CDX1P47902 MIR718-201ENST00000390190 70 ntBASIC15.44■□□□□ 0.06
CDX1P47902 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC15.44■□□□□ 0.06
CDX1P47902 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
CDX1P47902 SERF2-207ENST00000409614 582 ntTSL 2 BASIC15.44■□□□□ 0.06
CDX1P47902 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC15.44■□□□□ 0.06
CDX1P47902 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
CDX1P47902 RPS2P4-201ENST00000476944 856 ntBASIC15.44■□□□□ 0.06
CDX1P47902 AC008550.1-201ENST00000511500 884 ntBASIC15.44■□□□□ 0.06
CDX1P47902 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC15.44■□□□□ 0.06
CDX1P47902 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
CDX1P47902 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC15.44■□□□□ 0.06
CDX1P47902 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
CDX1P47902 USP36-216ENST00000589424 970 ntTSL 5 BASIC15.44■□□□□ 0.06
CDX1P47902 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC15.44■□□□□ 0.06
CDX1P47902 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC15.44■□□□□ 0.06
CDX1P47902 AC009053.2-201ENST00000563701 2365 ntBASIC15.44■□□□□ 0.06
CDX1P47902 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
CDX1P47902 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
CDX1P47902 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC15.44■□□□□ 0.06
CDX1P47902 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
CDX1P47902 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms