Protein–RNA interactions for Protein: A0A087WT01

TRAV27, T-cell receptor alpha variable 27 (Fragment), humanhuman

Predictions only

Length 109 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV27A0A087WT01 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRAV27A0A087WT01 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRAV27A0A087WT01 HCG11-201ENST00000411553 5696 ntBASIC17.21■□□□□ 0.35
TRAV27A0A087WT01 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRAV27A0A087WT01 AC005082.1-201ENST00000413042 2259 ntBASIC17.21■□□□□ 0.35
TRAV27A0A087WT01 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRAV27A0A087WT01 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRAV27A0A087WT01 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
TRAV27A0A087WT01 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRAV27A0A087WT01 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC17.21■□□□□ 0.35
TRAV27A0A087WT01 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC17.21■□□□□ 0.35
TRAV27A0A087WT01 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRAV27A0A087WT01 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRAV27A0A087WT01 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRAV27A0A087WT01 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC17.21■□□□□ 0.35
TRAV27A0A087WT01 ID1-201ENST00000376105 1233 ntBASIC17.21■□□□□ 0.35
TRAV27A0A087WT01 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC17.21■□□□□ 0.35
TRAV27A0A087WT01 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC17.21■□□□□ 0.35
TRAV27A0A087WT01 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC17.21■□□□□ 0.35
TRAV27A0A087WT01 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC17.21■□□□□ 0.35
TRAV27A0A087WT01 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC17.21■□□□□ 0.35
TRAV27A0A087WT01 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC17.21■□□□□ 0.35
TRAV27A0A087WT01 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC17.21■□□□□ 0.35
TRAV27A0A087WT01 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC17.21■□□□□ 0.35
TRAV27A0A087WT01 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRAV27A0A087WT01 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRAV27A0A087WT01 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
TRAV27A0A087WT01 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
TRAV27A0A087WT01 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC17.21■□□□□ 0.34
TRAV27A0A087WT01 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
TRAV27A0A087WT01 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.34
TRAV27A0A087WT01 GAS2L1P1-201ENST00000420145 1480 ntBASIC17.2■□□□□ 0.34
TRAV27A0A087WT01 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC17.2■□□□□ 0.34
TRAV27A0A087WT01 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TRAV27A0A087WT01 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC17.2■□□□□ 0.34
TRAV27A0A087WT01 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC17.2■□□□□ 0.34
TRAV27A0A087WT01 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC17.2■□□□□ 0.34
TRAV27A0A087WT01 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
TRAV27A0A087WT01 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TRAV27A0A087WT01 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC17.2■□□□□ 0.34
TRAV27A0A087WT01 TSPY21P-201ENST00000433481 731 ntBASIC17.2■□□□□ 0.34
TRAV27A0A087WT01 TSPY23P-201ENST00000440136 739 ntBASIC17.2■□□□□ 0.34
TRAV27A0A087WT01 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC17.2■□□□□ 0.34
TRAV27A0A087WT01 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC17.2■□□□□ 0.34
TRAV27A0A087WT01 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC17.2■□□□□ 0.34
TRAV27A0A087WT01 AL023875.1-201ENST00000640777 796 ntBASIC17.2■□□□□ 0.34
TRAV27A0A087WT01 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC17.2■□□□□ 0.34
TRAV27A0A087WT01 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
TRAV27A0A087WT01 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
TRAV27A0A087WT01 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
TRAV27A0A087WT01 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC17.2■□□□□ 0.34
TRAV27A0A087WT01 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TRAV27A0A087WT01 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRAV27A0A087WT01 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRAV27A0A087WT01 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRAV27A0A087WT01 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRAV27A0A087WT01 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRAV27A0A087WT01 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC17.19■□□□□ 0.34
TRAV27A0A087WT01 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
TRAV27A0A087WT01 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
TRAV27A0A087WT01 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC17.19■□□□□ 0.34
TRAV27A0A087WT01 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC17.19■□□□□ 0.34
TRAV27A0A087WT01 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRAV27A0A087WT01 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRAV27A0A087WT01 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
TRAV27A0A087WT01 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRAV27A0A087WT01 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC17.19■□□□□ 0.34
TRAV27A0A087WT01 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC17.19■□□□□ 0.34
TRAV27A0A087WT01 EMC9-206ENST00000560403 872 ntTSL 2 BASIC17.19■□□□□ 0.34
TRAV27A0A087WT01 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC17.19■□□□□ 0.34
TRAV27A0A087WT01 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC17.19■□□□□ 0.34
TRAV27A0A087WT01 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRAV27A0A087WT01 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC17.19■□□□□ 0.34
TRAV27A0A087WT01 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
TRAV27A0A087WT01 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRAV27A0A087WT01 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC17.19■□□□□ 0.34
TRAV27A0A087WT01 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
TRAV27A0A087WT01 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC17.19■□□□□ 0.34
TRAV27A0A087WT01 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRAV27A0A087WT01 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC17.18■□□□□ 0.34
TRAV27A0A087WT01 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC17.18■□□□□ 0.34
TRAV27A0A087WT01 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
TRAV27A0A087WT01 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRAV27A0A087WT01 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC17.18■□□□□ 0.34
TRAV27A0A087WT01 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC17.18■□□□□ 0.34
TRAV27A0A087WT01 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC17.18■□□□□ 0.34
TRAV27A0A087WT01 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRAV27A0A087WT01 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
TRAV27A0A087WT01 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRAV27A0A087WT01 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC17.18■□□□□ 0.34
TRAV27A0A087WT01 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRAV27A0A087WT01 KRASP1-201ENST00000407852 552 ntBASIC17.18■□□□□ 0.34
TRAV27A0A087WT01 AC239809.2-201ENST00000415381 517 ntBASIC17.18■□□□□ 0.34
TRAV27A0A087WT01 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC17.18■□□□□ 0.34
TRAV27A0A087WT01 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC17.18■□□□□ 0.34
TRAV27A0A087WT01 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC17.18■□□□□ 0.34
TRAV27A0A087WT01 AC083906.6-201ENST00000641366 219 ntBASIC17.18■□□□□ 0.34
TRAV27A0A087WT01 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRAV27A0A087WT01 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC17.18■□□□□ 0.34
TRAV27A0A087WT01 AC090164.3-201ENST00000610780 2143 ntBASIC17.18■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms