Protein–RNA interactions for Protein: Q9BSE4

HERPUD2, Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 2 protein, humanhuman

Predictions only

Length 406 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD2Q9BSE4 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
HERPUD2Q9BSE4 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
HERPUD2Q9BSE4 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC19.71■□□□□ 0.75
HERPUD2Q9BSE4 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
HERPUD2Q9BSE4 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC19.71■□□□□ 0.75
HERPUD2Q9BSE4 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
HERPUD2Q9BSE4 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
HERPUD2Q9BSE4 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
HERPUD2Q9BSE4 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HERPUD2Q9BSE4 SNAI3-AS1-205ENST00000568633 2096 ntBASIC19.71■□□□□ 0.75
HERPUD2Q9BSE4 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
HERPUD2Q9BSE4 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
HERPUD2Q9BSE4 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC19.7■□□□□ 0.74
HERPUD2Q9BSE4 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HERPUD2Q9BSE4 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HERPUD2Q9BSE4 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC19.7■□□□□ 0.74
HERPUD2Q9BSE4 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HERPUD2Q9BSE4 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
HERPUD2Q9BSE4 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
HERPUD2Q9BSE4 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
HERPUD2Q9BSE4 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HERPUD2Q9BSE4 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HERPUD2Q9BSE4 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC19.7■□□□□ 0.74
HERPUD2Q9BSE4 GCSHP5-201ENST00000443090 522 ntBASIC19.7■□□□□ 0.74
HERPUD2Q9BSE4 AC098590.1-201ENST00000468126 897 ntBASIC19.7■□□□□ 0.74
HERPUD2Q9BSE4 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC19.7■□□□□ 0.74
HERPUD2Q9BSE4 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
HERPUD2Q9BSE4 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC19.7■□□□□ 0.74
HERPUD2Q9BSE4 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC19.7■□□□□ 0.74
HERPUD2Q9BSE4 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC19.7■□□□□ 0.74
HERPUD2Q9BSE4 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC19.7■□□□□ 0.74
HERPUD2Q9BSE4 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
HERPUD2Q9BSE4 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
HERPUD2Q9BSE4 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
HERPUD2Q9BSE4 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
HERPUD2Q9BSE4 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
HERPUD2Q9BSE4 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
HERPUD2Q9BSE4 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC19.7■□□□□ 0.74
HERPUD2Q9BSE4 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
HERPUD2Q9BSE4 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
HERPUD2Q9BSE4 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HERPUD2Q9BSE4 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HERPUD2Q9BSE4 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HERPUD2Q9BSE4 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
HERPUD2Q9BSE4 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
HERPUD2Q9BSE4 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
HERPUD2Q9BSE4 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HERPUD2Q9BSE4 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HERPUD2Q9BSE4 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HERPUD2Q9BSE4 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC19.69■□□□□ 0.74
HERPUD2Q9BSE4 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HERPUD2Q9BSE4 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HERPUD2Q9BSE4 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
HERPUD2Q9BSE4 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
HERPUD2Q9BSE4 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC19.69■□□□□ 0.74
HERPUD2Q9BSE4 AC239809.2-201ENST00000415381 517 ntBASIC19.69■□□□□ 0.74
HERPUD2Q9BSE4 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC19.69■□□□□ 0.74
HERPUD2Q9BSE4 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC19.69■□□□□ 0.74
HERPUD2Q9BSE4 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
HERPUD2Q9BSE4 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
HERPUD2Q9BSE4 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HERPUD2Q9BSE4 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
HERPUD2Q9BSE4 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HERPUD2Q9BSE4 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
HERPUD2Q9BSE4 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HERPUD2Q9BSE4 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC19.69■□□□□ 0.74
HERPUD2Q9BSE4 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
HERPUD2Q9BSE4 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC19.69■□□□□ 0.74
HERPUD2Q9BSE4 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC19.69■□□□□ 0.74
HERPUD2Q9BSE4 COBL-210ENST00000632460 1941 ntTSL 5 BASIC19.68■□□□□ 0.74
HERPUD2Q9BSE4 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
HERPUD2Q9BSE4 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC19.68■□□□□ 0.74
HERPUD2Q9BSE4 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC19.68■□□□□ 0.74
HERPUD2Q9BSE4 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
HERPUD2Q9BSE4 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
HERPUD2Q9BSE4 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC19.68■□□□□ 0.74
HERPUD2Q9BSE4 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC19.68■□□□□ 0.74
HERPUD2Q9BSE4 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC19.68■□□□□ 0.74
HERPUD2Q9BSE4 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC19.68■□□□□ 0.74
HERPUD2Q9BSE4 AC066615.1-201ENST00000640911 628 ntBASIC19.68■□□□□ 0.74
HERPUD2Q9BSE4 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
HERPUD2Q9BSE4 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
HERPUD2Q9BSE4 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC19.68■□□□□ 0.74
HERPUD2Q9BSE4 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HERPUD2Q9BSE4 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HERPUD2Q9BSE4 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC19.68■□□□□ 0.74
HERPUD2Q9BSE4 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
HERPUD2Q9BSE4 BICD1-207ENST00000551848 1962 ntBASIC19.68■□□□□ 0.74
HERPUD2Q9BSE4 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC19.68■□□□□ 0.74
HERPUD2Q9BSE4 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HERPUD2Q9BSE4 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC19.68■□□□□ 0.74
HERPUD2Q9BSE4 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC19.67■□□□□ 0.74
HERPUD2Q9BSE4 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
HERPUD2Q9BSE4 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
HERPUD2Q9BSE4 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
HERPUD2Q9BSE4 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
HERPUD2Q9BSE4 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
HERPUD2Q9BSE4 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
HERPUD2Q9BSE4 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
HERPUD2Q9BSE4 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC19.67■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 58.8 ms