Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC18.19■□□□□ 0.5
VMP1Q96GC9 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC18.19■□□□□ 0.5
VMP1Q96GC9 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC18.19■□□□□ 0.5
VMP1Q96GC9 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
VMP1Q96GC9 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC18.19■□□□□ 0.5
VMP1Q96GC9 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC18.19■□□□□ 0.5
VMP1Q96GC9 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC18.19■□□□□ 0.5
VMP1Q96GC9 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VMP1Q96GC9 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC18.18■□□□□ 0.5
VMP1Q96GC9 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC18.18■□□□□ 0.5
VMP1Q96GC9 AC005332.8-201ENST00000622750 2735 ntBASIC18.18■□□□□ 0.5
VMP1Q96GC9 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
VMP1Q96GC9 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
VMP1Q96GC9 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
VMP1Q96GC9 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
VMP1Q96GC9 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VMP1Q96GC9 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
VMP1Q96GC9 SNORA78-201ENST00000459373 127 ntBASIC18.18■□□□□ 0.5
VMP1Q96GC9 FDX2-207ENST00000494368 584 ntTSL 4 BASIC18.18■□□□□ 0.5
VMP1Q96GC9 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC18.18■□□□□ 0.5
VMP1Q96GC9 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC18.18■□□□□ 0.5
VMP1Q96GC9 WAC-202ENST00000347934 2839 ntTSL 5 BASIC18.18■□□□□ 0.5
VMP1Q96GC9 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VMP1Q96GC9 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC18.18■□□□□ 0.5
VMP1Q96GC9 AC079598.2-202ENST00000546624 1451 ntBASIC18.18■□□□□ 0.5
VMP1Q96GC9 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
VMP1Q96GC9 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
VMP1Q96GC9 Z82202.1-201ENST00000623446 1880 ntBASIC18.18■□□□□ 0.5
VMP1Q96GC9 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
VMP1Q96GC9 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC18.18■□□□□ 0.5
VMP1Q96GC9 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VMP1Q96GC9 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC18.17■□□□□ 0.5
VMP1Q96GC9 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
VMP1Q96GC9 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC18.17■□□□□ 0.5
VMP1Q96GC9 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
VMP1Q96GC9 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VMP1Q96GC9 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VMP1Q96GC9 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
VMP1Q96GC9 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VMP1Q96GC9 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC18.17■□□□□ 0.5
VMP1Q96GC9 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
VMP1Q96GC9 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
VMP1Q96GC9 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
VMP1Q96GC9 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
VMP1Q96GC9 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
VMP1Q96GC9 NIFKP9-201ENST00000419265 221 ntBASIC18.17■□□□□ 0.5
VMP1Q96GC9 SAPCD2P4-201ENST00000424595 1171 ntBASIC18.17■□□□□ 0.5
VMP1Q96GC9 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC18.17■□□□□ 0.5
VMP1Q96GC9 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC18.17■□□□□ 0.5
VMP1Q96GC9 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC18.17■□□□□ 0.5
VMP1Q96GC9 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC18.17■□□□□ 0.5
VMP1Q96GC9 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
VMP1Q96GC9 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC18.17■□□□□ 0.5
VMP1Q96GC9 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VMP1Q96GC9 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC18.17■□□□□ 0.5
VMP1Q96GC9 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VMP1Q96GC9 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VMP1Q96GC9 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VMP1Q96GC9 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC18.17■□□□□ 0.5
VMP1Q96GC9 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC18.17■□□□□ 0.5
VMP1Q96GC9 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC18.17■□□□□ 0.5
VMP1Q96GC9 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
VMP1Q96GC9 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC18.17■□□□□ 0.5
VMP1Q96GC9 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC18.17■□□□□ 0.5
VMP1Q96GC9 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
VMP1Q96GC9 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VMP1Q96GC9 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
VMP1Q96GC9 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
VMP1Q96GC9 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
VMP1Q96GC9 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
VMP1Q96GC9 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
VMP1Q96GC9 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
VMP1Q96GC9 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
VMP1Q96GC9 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC18.16■□□□□ 0.5
VMP1Q96GC9 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
VMP1Q96GC9 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VMP1Q96GC9 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC18.16■□□□□ 0.5
VMP1Q96GC9 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC18.16■□□□□ 0.5
VMP1Q96GC9 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
VMP1Q96GC9 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC18.16■□□□□ 0.5
VMP1Q96GC9 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VMP1Q96GC9 KSR1P1-201ENST00000446298 240 ntBASIC18.16■□□□□ 0.5
VMP1Q96GC9 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC18.16■□□□□ 0.5
VMP1Q96GC9 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
VMP1Q96GC9 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
VMP1Q96GC9 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC18.16■□□□□ 0.5
VMP1Q96GC9 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC18.16■□□□□ 0.5
VMP1Q96GC9 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC18.16■□□□□ 0.5
VMP1Q96GC9 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VMP1Q96GC9 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
VMP1Q96GC9 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
VMP1Q96GC9 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
VMP1Q96GC9 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VMP1Q96GC9 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
VMP1Q96GC9 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VMP1Q96GC9 KRT8P8-201ENST00000434750 1448 ntBASIC18.15■□□□□ 0.5
VMP1Q96GC9 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC18.15■□□□□ 0.5
VMP1Q96GC9 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC18.15■□□□□ 0.5
VMP1Q96GC9 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
VMP1Q96GC9 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC18.15■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms