Protein–RNA interactions for Protein: Q5T3J3

LRIF1, Ligand-dependent nuclear receptor-interacting factor 1, humanhuman

Predictions only

Length 769 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRIF1Q5T3J3 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
LRIF1Q5T3J3 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
LRIF1Q5T3J3 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LRIF1Q5T3J3 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LRIF1Q5T3J3 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
LRIF1Q5T3J3 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC17.94■□□□□ 0.46
LRIF1Q5T3J3 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC17.94■□□□□ 0.46
LRIF1Q5T3J3 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
LRIF1Q5T3J3 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LRIF1Q5T3J3 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
LRIF1Q5T3J3 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
LRIF1Q5T3J3 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC17.93■□□□□ 0.46
LRIF1Q5T3J3 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LRIF1Q5T3J3 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC17.93■□□□□ 0.46
LRIF1Q5T3J3 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
LRIF1Q5T3J3 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC17.93■□□□□ 0.46
LRIF1Q5T3J3 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
LRIF1Q5T3J3 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC17.93■□□□□ 0.46
LRIF1Q5T3J3 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LRIF1Q5T3J3 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
LRIF1Q5T3J3 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC17.93■□□□□ 0.46
LRIF1Q5T3J3 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LRIF1Q5T3J3 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
LRIF1Q5T3J3 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC17.93■□□□□ 0.46
LRIF1Q5T3J3 UNC93B4-201ENST00000505679 747 ntBASIC17.93■□□□□ 0.46
LRIF1Q5T3J3 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC17.93■□□□□ 0.46
LRIF1Q5T3J3 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC17.93■□□□□ 0.46
LRIF1Q5T3J3 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LRIF1Q5T3J3 Six3os1_6.1-201ENST00000620790 196 ntBASIC17.93■□□□□ 0.46
LRIF1Q5T3J3 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
LRIF1Q5T3J3 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
LRIF1Q5T3J3 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
LRIF1Q5T3J3 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
LRIF1Q5T3J3 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
LRIF1Q5T3J3 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC17.93■□□□□ 0.46
LRIF1Q5T3J3 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
LRIF1Q5T3J3 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
LRIF1Q5T3J3 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC17.93■□□□□ 0.46
LRIF1Q5T3J3 AC026471.1-201ENST00000564629 3026 ntBASIC17.93■□□□□ 0.46
LRIF1Q5T3J3 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
LRIF1Q5T3J3 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
LRIF1Q5T3J3 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC17.93■□□□□ 0.46
LRIF1Q5T3J3 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
LRIF1Q5T3J3 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LRIF1Q5T3J3 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LRIF1Q5T3J3 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LRIF1Q5T3J3 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
LRIF1Q5T3J3 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
LRIF1Q5T3J3 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
LRIF1Q5T3J3 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LRIF1Q5T3J3 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LRIF1Q5T3J3 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
LRIF1Q5T3J3 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LRIF1Q5T3J3 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
LRIF1Q5T3J3 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LRIF1Q5T3J3 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
LRIF1Q5T3J3 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LRIF1Q5T3J3 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC17.92■□□□□ 0.46
LRIF1Q5T3J3 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC17.92■□□□□ 0.46
LRIF1Q5T3J3 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC17.92■□□□□ 0.46
LRIF1Q5T3J3 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LRIF1Q5T3J3 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
LRIF1Q5T3J3 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC17.92■□□□□ 0.46
LRIF1Q5T3J3 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC17.92■□□□□ 0.46
LRIF1Q5T3J3 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LRIF1Q5T3J3 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
LRIF1Q5T3J3 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
LRIF1Q5T3J3 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
LRIF1Q5T3J3 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LRIF1Q5T3J3 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LRIF1Q5T3J3 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
LRIF1Q5T3J3 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
LRIF1Q5T3J3 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
LRIF1Q5T3J3 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LRIF1Q5T3J3 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
LRIF1Q5T3J3 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LRIF1Q5T3J3 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC17.91■□□□□ 0.46
LRIF1Q5T3J3 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC17.91■□□□□ 0.46
LRIF1Q5T3J3 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
LRIF1Q5T3J3 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LRIF1Q5T3J3 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LRIF1Q5T3J3 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
LRIF1Q5T3J3 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LRIF1Q5T3J3 POM121L13P-201ENST00000422362 380 ntBASIC17.91■□□□□ 0.46
LRIF1Q5T3J3 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
LRIF1Q5T3J3 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC17.91■□□□□ 0.46
LRIF1Q5T3J3 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC17.91■□□□□ 0.46
LRIF1Q5T3J3 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC17.91■□□□□ 0.46
LRIF1Q5T3J3 INO80E-214ENST00000620599 515 ntTSL 2 BASIC17.91■□□□□ 0.46
LRIF1Q5T3J3 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
LRIF1Q5T3J3 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LRIF1Q5T3J3 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC17.91■□□□□ 0.46
LRIF1Q5T3J3 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC17.91■□□□□ 0.46
LRIF1Q5T3J3 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
LRIF1Q5T3J3 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LRIF1Q5T3J3 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LRIF1Q5T3J3 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
LRIF1Q5T3J3 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LRIF1Q5T3J3 SNAI3-AS1-205ENST00000568633 2096 ntBASIC17.91■□□□□ 0.46
LRIF1Q5T3J3 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC17.9■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms