Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 RARRES2P10-201ENST00000564312 460 ntBASIC16.99■□□□□ 0.31
CLRN1P58418 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC16.99■□□□□ 0.31
CLRN1P58418 AL353708.3-201ENST00000610272 989 ntBASIC16.99■□□□□ 0.31
CLRN1P58418 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
CLRN1P58418 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CLRN1P58418 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CLRN1P58418 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CLRN1P58418 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
CLRN1P58418 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CLRN1P58418 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CLRN1P58418 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CLRN1P58418 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CLRN1P58418 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
CLRN1P58418 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
CLRN1P58418 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC16.98■□□□□ 0.31
CLRN1P58418 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CLRN1P58418 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CLRN1P58418 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC16.98■□□□□ 0.31
CLRN1P58418 KRT16P1-201ENST00000399124 1418 ntBASIC16.98■□□□□ 0.31
CLRN1P58418 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
CLRN1P58418 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CLRN1P58418 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC16.98■□□□□ 0.31
CLRN1P58418 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CLRN1P58418 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CLRN1P58418 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC16.98■□□□□ 0.31
CLRN1P58418 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC16.98■□□□□ 0.31
CLRN1P58418 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CLRN1P58418 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC16.98■□□□□ 0.31
CLRN1P58418 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CLRN1P58418 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CLRN1P58418 RPS2P4-201ENST00000476944 856 ntBASIC16.98■□□□□ 0.31
CLRN1P58418 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC16.98■□□□□ 0.31
CLRN1P58418 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC16.98■□□□□ 0.31
CLRN1P58418 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC16.98■□□□□ 0.31
CLRN1P58418 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC16.98■□□□□ 0.31
CLRN1P58418 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC16.98■□□□□ 0.31
CLRN1P58418 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC16.98■□□□□ 0.31
CLRN1P58418 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC16.98■□□□□ 0.31
CLRN1P58418 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC16.98■□□□□ 0.31
CLRN1P58418 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC16.98■□□□□ 0.31
CLRN1P58418 CR392000.1-201ENST00000624770 1228 ntBASIC16.98■□□□□ 0.31
CLRN1P58418 HTR7P1-202ENST00000624664 4411 ntBASIC16.98■□□□□ 0.31
CLRN1P58418 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC16.98■□□□□ 0.31
CLRN1P58418 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CLRN1P58418 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
CLRN1P58418 FEM1AP3-201ENST00000403722 1741 ntBASIC16.98■□□□□ 0.31
CLRN1P58418 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
CLRN1P58418 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC16.98■□□□□ 0.31
CLRN1P58418 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CLRN1P58418 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CLRN1P58418 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC16.98■□□□□ 0.31
CLRN1P58418 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC16.98■□□□□ 0.31
CLRN1P58418 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC16.98■□□□□ 0.31
CLRN1P58418 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
CLRN1P58418 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CLRN1P58418 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC16.97■□□□□ 0.31
CLRN1P58418 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
CLRN1P58418 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC16.97■□□□□ 0.31
CLRN1P58418 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CLRN1P58418 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
CLRN1P58418 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
CLRN1P58418 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CLRN1P58418 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CLRN1P58418 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CLRN1P58418 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
CLRN1P58418 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
CLRN1P58418 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
CLRN1P58418 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
CLRN1P58418 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CLRN1P58418 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
CLRN1P58418 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CLRN1P58418 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC16.97■□□□□ 0.31
CLRN1P58418 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CLRN1P58418 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
CLRN1P58418 PTPA-216ENST00000432651 857 ntTSL 2 BASIC16.97■□□□□ 0.31
CLRN1P58418 AL158047.1-201ENST00000445918 881 ntBASIC16.97■□□□□ 0.31
CLRN1P58418 FDX2-207ENST00000494368 584 ntTSL 4 BASIC16.97■□□□□ 0.31
CLRN1P58418 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC16.97■□□□□ 0.31
CLRN1P58418 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
CLRN1P58418 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
CLRN1P58418 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC16.97■□□□□ 0.31
CLRN1P58418 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC16.97■□□□□ 0.31
CLRN1P58418 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC16.97■□□□□ 0.31
CLRN1P58418 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC16.97■□□□□ 0.31
CLRN1P58418 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
CLRN1P58418 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CLRN1P58418 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
CLRN1P58418 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CLRN1P58418 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC16.97■□□□□ 0.31
CLRN1P58418 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CLRN1P58418 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CLRN1P58418 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC16.97■□□□□ 0.31
CLRN1P58418 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CLRN1P58418 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CLRN1P58418 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC16.97■□□□□ 0.31
CLRN1P58418 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC16.97■□□□□ 0.31
CLRN1P58418 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
CLRN1P58418 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC16.97■□□□□ 0.31
CLRN1P58418 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CLRN1P58418 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 55.2 ms