Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC19.85■□□□□ 0.77
COL6A3P12111 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC19.85■□□□□ 0.77
COL6A3P12111 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC19.85■□□□□ 0.77
COL6A3P12111 CFL1-202ENST00000524553 860 ntTSL 2 BASIC19.85■□□□□ 0.77
COL6A3P12111 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC19.85■□□□□ 0.77
COL6A3P12111 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
COL6A3P12111 BAD-202ENST00000394531 631 ntTSL 3 BASIC19.85■□□□□ 0.77
COL6A3P12111 HIST2H3DP1-201ENST00000401004 416 ntBASIC19.85■□□□□ 0.77
COL6A3P12111 AC022494.1-201ENST00000466044 728 ntBASIC19.85■□□□□ 0.77
COL6A3P12111 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
COL6A3P12111 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC19.85■□□□□ 0.77
COL6A3P12111 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC19.85■□□□□ 0.77
COL6A3P12111 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
COL6A3P12111 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
COL6A3P12111 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC19.85■□□□□ 0.77
COL6A3P12111 MINOS1P3-201ENST00000457048 203 ntBASIC19.85■□□□□ 0.77
COL6A3P12111 MIR4469-201ENST00000583919 79 ntBASIC19.85■□□□□ 0.77
COL6A3P12111 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
COL6A3P12111 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL6A3P12111 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC19.84■□□□□ 0.77
COL6A3P12111 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL6A3P12111 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC19.84■□□□□ 0.77
COL6A3P12111 AL008721.1-201ENST00000609964 604 ntBASIC19.84■□□□□ 0.77
COL6A3P12111 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
COL6A3P12111 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
COL6A3P12111 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC19.84■□□□□ 0.77
COL6A3P12111 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL6A3P12111 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL6A3P12111 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
COL6A3P12111 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC19.84■□□□□ 0.77
COL6A3P12111 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC19.84■□□□□ 0.77
COL6A3P12111 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC19.84■□□□□ 0.77
COL6A3P12111 PHGDH-210ENST00000641115 1638 ntBASIC19.84■□□□□ 0.77
COL6A3P12111 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL6A3P12111 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC19.84■□□□□ 0.77
COL6A3P12111 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC19.84■□□□□ 0.77
COL6A3P12111 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC19.84■□□□□ 0.77
COL6A3P12111 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
COL6A3P12111 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
COL6A3P12111 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
COL6A3P12111 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC19.83■□□□□ 0.77
COL6A3P12111 AC023274.1-201ENST00000418278 595 ntBASIC19.83■□□□□ 0.77
COL6A3P12111 RPS2P1-201ENST00000434010 821 ntBASIC19.83■□□□□ 0.77
COL6A3P12111 MIR3917-201ENST00000580971 93 ntBASIC19.83■□□□□ 0.77
COL6A3P12111 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
COL6A3P12111 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
COL6A3P12111 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC19.83■□□□□ 0.77
COL6A3P12111 CREM-210ENST00000374721 2020 ntTSL 5 BASIC19.83■□□□□ 0.77
COL6A3P12111 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
COL6A3P12111 RPL28-205ENST00000558131 444 ntTSL 5 BASIC19.83■□□□□ 0.76
COL6A3P12111 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC19.83■□□□□ 0.76
COL6A3P12111 AC005332.3-201ENST00000589904 676 ntBASIC19.83■□□□□ 0.76
COL6A3P12111 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.76
COL6A3P12111 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
COL6A3P12111 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
COL6A3P12111 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
COL6A3P12111 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC19.83■□□□□ 0.76
COL6A3P12111 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
COL6A3P12111 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
COL6A3P12111 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.76
COL6A3P12111 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC19.83■□□□□ 0.76
COL6A3P12111 NUS1P2-201ENST00000417358 873 ntBASIC19.83■□□□□ 0.76
COL6A3P12111 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC19.83■□□□□ 0.76
COL6A3P12111 AC005336.2-201ENST00000593183 939 ntBASIC19.83■□□□□ 0.76
COL6A3P12111 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC19.83■□□□□ 0.76
COL6A3P12111 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
COL6A3P12111 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
COL6A3P12111 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL6A3P12111 CASK-201ENST00000378154 2494 ntTSL 5 BASIC19.82■□□□□ 0.76
COL6A3P12111 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL6A3P12111 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL6A3P12111 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC19.82■□□□□ 0.76
COL6A3P12111 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL6A3P12111 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL6A3P12111 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL6A3P12111 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
COL6A3P12111 AC096582.2-201ENST00000510860 516 ntBASIC19.82■□□□□ 0.76
COL6A3P12111 RNA5SP415-201ENST00000517246 115 ntBASIC19.82■□□□□ 0.76
COL6A3P12111 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC19.82■□□□□ 0.76
COL6A3P12111 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL6A3P12111 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC19.82■□□□□ 0.76
COL6A3P12111 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL6A3P12111 AC132008.2-207ENST00000454517 770 ntBASIC19.82■□□□□ 0.76
COL6A3P12111 Z83851.2-201ENST00000609564 659 ntBASIC19.82■□□□□ 0.76
COL6A3P12111 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
COL6A3P12111 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
COL6A3P12111 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
COL6A3P12111 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
COL6A3P12111 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
COL6A3P12111 AC005225.4-201ENST00000557330 545 ntBASIC19.81■□□□□ 0.76
COL6A3P12111 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
COL6A3P12111 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
COL6A3P12111 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC19.81■□□□□ 0.76
COL6A3P12111 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC19.81■□□□□ 0.76
COL6A3P12111 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC19.81■□□□□ 0.76
COL6A3P12111 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
COL6A3P12111 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
COL6A3P12111 ME2-208ENST00000638937 2471 ntTSL 5 BASIC19.81■□□□□ 0.76
COL6A3P12111 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
COL6A3P12111 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms