Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
TPM1P09493 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
TPM1P09493 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TPM1P09493 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TPM1P09493 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
TPM1P09493 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
TPM1P09493 YBX1P10-201ENST00000444752 975 ntBASIC20.93■□□□□ 0.94
TPM1P09493 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC20.93■□□□□ 0.94
TPM1P09493 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
TPM1P09493 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC20.93■□□□□ 0.94
TPM1P09493 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TPM1P09493 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TPM1P09493 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC20.93■□□□□ 0.94
TPM1P09493 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TPM1P09493 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
TPM1P09493 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TPM1P09493 MKRN4P-201ENST00000444706 1521 ntBASIC20.93■□□□□ 0.94
TPM1P09493 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC20.93■□□□□ 0.94
TPM1P09493 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
TPM1P09493 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TPM1P09493 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC20.92■□□□□ 0.94
TPM1P09493 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC20.92■□□□□ 0.94
TPM1P09493 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
TPM1P09493 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TPM1P09493 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TPM1P09493 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TPM1P09493 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TPM1P09493 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TPM1P09493 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
TPM1P09493 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC20.92■□□□□ 0.94
TPM1P09493 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TPM1P09493 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC20.92■□□□□ 0.94
TPM1P09493 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
TPM1P09493 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC20.92■□□□□ 0.94
TPM1P09493 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC20.92■□□□□ 0.94
TPM1P09493 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC20.92■□□□□ 0.94
TPM1P09493 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
TPM1P09493 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
TPM1P09493 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
TPM1P09493 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TPM1P09493 UBQLN4P1-201ENST00000461599 1801 ntBASIC20.92■□□□□ 0.94
TPM1P09493 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC20.92■□□□□ 0.94
TPM1P09493 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TPM1P09493 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
TPM1P09493 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TPM1P09493 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC20.92■□□□□ 0.94
TPM1P09493 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
TPM1P09493 AC018470.1-201ENST00000624790 3129 ntBASIC20.91■□□□□ 0.94
TPM1P09493 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
TPM1P09493 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
TPM1P09493 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
TPM1P09493 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
TPM1P09493 NOC2LP2-201ENST00000407594 1944 ntBASIC20.91■□□□□ 0.94
TPM1P09493 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC20.91■□□□□ 0.94
TPM1P09493 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
TPM1P09493 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC20.91■□□□□ 0.94
TPM1P09493 MAX-217ENST00000557277 728 ntTSL 3 BASIC20.91■□□□□ 0.94
TPM1P09493 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
TPM1P09493 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC20.91■□□□□ 0.94
TPM1P09493 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC20.91■□□□□ 0.94
TPM1P09493 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
TPM1P09493 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
TPM1P09493 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC20.9■□□□□ 0.94
TPM1P09493 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC20.9■□□□□ 0.94
TPM1P09493 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
TPM1P09493 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TPM1P09493 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
TPM1P09493 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC20.9■□□□□ 0.94
TPM1P09493 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TPM1P09493 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
TPM1P09493 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
TPM1P09493 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TPM1P09493 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
TPM1P09493 BX276092.2-201ENST00000417668 665 ntBASIC20.9■□□□□ 0.94
TPM1P09493 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
TPM1P09493 PHB2-213ENST00000546111 858 ntTSL 2 BASIC20.9■□□□□ 0.94
TPM1P09493 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
TPM1P09493 AL121906.2-201ENST00000621597 723 ntBASIC20.9■□□□□ 0.94
TPM1P09493 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TPM1P09493 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TPM1P09493 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
TPM1P09493 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
TPM1P09493 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TPM1P09493 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC20.9■□□□□ 0.94
TPM1P09493 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TPM1P09493 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TPM1P09493 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
TPM1P09493 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC20.9■□□□□ 0.94
TPM1P09493 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC20.9■□□□□ 0.94
TPM1P09493 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TPM1P09493 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.94
TPM1P09493 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
TPM1P09493 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
TPM1P09493 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
TPM1P09493 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
TPM1P09493 RPS2P52-201ENST00000469610 820 ntBASIC20.89■□□□□ 0.93
TPM1P09493 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC20.89■□□□□ 0.93
TPM1P09493 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC20.89■□□□□ 0.93
TPM1P09493 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
TPM1P09493 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms