Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC18.51■□□□□ 0.55
HDAC3O15379 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
HDAC3O15379 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HDAC3O15379 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC18.51■□□□□ 0.55
HDAC3O15379 AL050303.2-201ENST00000619798 666 ntBASIC18.51■□□□□ 0.55
HDAC3O15379 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HDAC3O15379 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HDAC3O15379 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC18.51■□□□□ 0.55
HDAC3O15379 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HDAC3O15379 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
HDAC3O15379 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
HDAC3O15379 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HDAC3O15379 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HDAC3O15379 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC18.5■□□□□ 0.55
HDAC3O15379 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
HDAC3O15379 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
HDAC3O15379 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
HDAC3O15379 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
HDAC3O15379 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HDAC3O15379 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HDAC3O15379 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
HDAC3O15379 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC18.5■□□□□ 0.55
HDAC3O15379 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HDAC3O15379 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
HDAC3O15379 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
HDAC3O15379 DUSP5P2-201ENST00000426873 1033 ntBASIC18.5■□□□□ 0.55
HDAC3O15379 AC026271.2-201ENST00000428091 497 ntBASIC18.5■□□□□ 0.55
HDAC3O15379 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
HDAC3O15379 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC18.5■□□□□ 0.55
HDAC3O15379 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC18.5■□□□□ 0.55
HDAC3O15379 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
HDAC3O15379 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HDAC3O15379 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HDAC3O15379 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
HDAC3O15379 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HDAC3O15379 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
HDAC3O15379 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HDAC3O15379 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
HDAC3O15379 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
HDAC3O15379 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
HDAC3O15379 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HDAC3O15379 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
HDAC3O15379 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
HDAC3O15379 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HDAC3O15379 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC18.49■□□□□ 0.55
HDAC3O15379 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HDAC3O15379 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
HDAC3O15379 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HDAC3O15379 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC18.49■□□□□ 0.55
HDAC3O15379 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HDAC3O15379 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
HDAC3O15379 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
HDAC3O15379 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC18.49■□□□□ 0.55
HDAC3O15379 TSPY21P-201ENST00000433481 731 ntBASIC18.49■□□□□ 0.55
HDAC3O15379 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC18.49■□□□□ 0.55
HDAC3O15379 PNN-205ENST00000556530 601 ntTSL 2 BASIC18.49■□□□□ 0.55
HDAC3O15379 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC18.49■□□□□ 0.55
HDAC3O15379 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC18.49■□□□□ 0.55
HDAC3O15379 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
HDAC3O15379 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HDAC3O15379 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
HDAC3O15379 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC18.49■□□□□ 0.55
HDAC3O15379 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC18.49■□□□□ 0.55
HDAC3O15379 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
HDAC3O15379 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
HDAC3O15379 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC18.49■□□□□ 0.55
HDAC3O15379 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
HDAC3O15379 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
HDAC3O15379 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HDAC3O15379 AC138932.1-201ENST00000534164 6830 ntBASIC18.49■□□□□ 0.55
HDAC3O15379 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC18.48■□□□□ 0.55
HDAC3O15379 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
HDAC3O15379 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
HDAC3O15379 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
HDAC3O15379 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
HDAC3O15379 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC18.48■□□□□ 0.55
HDAC3O15379 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC18.48■□□□□ 0.55
HDAC3O15379 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC18.48■□□□□ 0.55
HDAC3O15379 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC18.48■□□□□ 0.55
HDAC3O15379 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC18.48■□□□□ 0.55
HDAC3O15379 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC18.48■□□□□ 0.55
HDAC3O15379 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC18.48■□□□□ 0.55
HDAC3O15379 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC18.48■□□□□ 0.55
HDAC3O15379 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC18.48■□□□□ 0.55
HDAC3O15379 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC18.48■□□□□ 0.55
HDAC3O15379 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC18.48■□□□□ 0.55
HDAC3O15379 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
HDAC3O15379 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
HDAC3O15379 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
HDAC3O15379 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
HDAC3O15379 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
HDAC3O15379 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC18.48■□□□□ 0.55
HDAC3O15379 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
HDAC3O15379 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC18.48■□□□□ 0.55
HDAC3O15379 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC18.48■□□□□ 0.55
HDAC3O15379 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
HDAC3O15379 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC18.48■□□□□ 0.55
HDAC3O15379 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC18.48■□□□□ 0.55
HDAC3O15379 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC18.48■□□□□ 0.55
HDAC3O15379 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC18.48■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 78.1 ms