Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
FOXN3O00409 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
FOXN3O00409 AC004951.3-201ENST00000418645 1148 ntBASIC20.35■□□□□ 0.85
FOXN3O00409 GCSHP5-201ENST00000443090 522 ntBASIC20.35■□□□□ 0.85
FOXN3O00409 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC20.35■□□□□ 0.85
FOXN3O00409 AC011506.1-201ENST00000474329 610 ntBASIC20.35■□□□□ 0.85
FOXN3O00409 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC20.35■□□□□ 0.85
FOXN3O00409 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
FOXN3O00409 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC20.35■□□□□ 0.85
FOXN3O00409 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC20.35■□□□□ 0.85
FOXN3O00409 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
FOXN3O00409 AC130371.2-201ENST00000619443 611 ntBASIC20.35■□□□□ 0.85
FOXN3O00409 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC20.35■□□□□ 0.85
FOXN3O00409 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC20.35■□□□□ 0.85
FOXN3O00409 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC20.35■□□□□ 0.85
FOXN3O00409 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
FOXN3O00409 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
FOXN3O00409 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
FOXN3O00409 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
FOXN3O00409 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC20.35■□□□□ 0.85
FOXN3O00409 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
FOXN3O00409 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC20.34■□□□□ 0.85
FOXN3O00409 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC20.34■□□□□ 0.85
FOXN3O00409 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
FOXN3O00409 Z98044.1-201ENST00000632503 1764 ntBASIC20.34■□□□□ 0.85
FOXN3O00409 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
FOXN3O00409 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
FOXN3O00409 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
FOXN3O00409 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
FOXN3O00409 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC20.34■□□□□ 0.85
FOXN3O00409 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
FOXN3O00409 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
FOXN3O00409 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC20.34■□□□□ 0.85
FOXN3O00409 AL158047.1-201ENST00000445918 881 ntBASIC20.34■□□□□ 0.85
FOXN3O00409 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC20.34■□□□□ 0.85
FOXN3O00409 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC20.34■□□□□ 0.85
FOXN3O00409 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC20.34■□□□□ 0.85
FOXN3O00409 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
FOXN3O00409 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC20.34■□□□□ 0.85
FOXN3O00409 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
FOXN3O00409 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
FOXN3O00409 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
FOXN3O00409 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
FOXN3O00409 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
FOXN3O00409 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC20.34■□□□□ 0.85
FOXN3O00409 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
FOXN3O00409 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC20.34■□□□□ 0.85
FOXN3O00409 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
FOXN3O00409 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
FOXN3O00409 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC20.33■□□□□ 0.85
FOXN3O00409 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
FOXN3O00409 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
FOXN3O00409 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
FOXN3O00409 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
FOXN3O00409 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
FOXN3O00409 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC20.33■□□□□ 0.85
FOXN3O00409 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC20.33■□□□□ 0.85
FOXN3O00409 ABHD17AP1-201ENST00000358206 933 ntBASIC20.33■□□□□ 0.85
FOXN3O00409 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
FOXN3O00409 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC20.33■□□□□ 0.85
FOXN3O00409 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
FOXN3O00409 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC20.33■□□□□ 0.85
FOXN3O00409 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC20.33■□□□□ 0.85
FOXN3O00409 AC083906.6-201ENST00000641366 219 ntBASIC20.33■□□□□ 0.85
FOXN3O00409 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC20.33■□□□□ 0.85
FOXN3O00409 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC20.33■□□□□ 0.85
FOXN3O00409 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.85
FOXN3O00409 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
FOXN3O00409 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
FOXN3O00409 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC20.33■□□□□ 0.84
FOXN3O00409 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
FOXN3O00409 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
FOXN3O00409 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
FOXN3O00409 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
FOXN3O00409 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
FOXN3O00409 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
FOXN3O00409 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC20.32■□□□□ 0.84
FOXN3O00409 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC20.32■□□□□ 0.84
FOXN3O00409 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC20.32■□□□□ 0.84
FOXN3O00409 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC20.32■□□□□ 0.84
FOXN3O00409 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC20.32■□□□□ 0.84
FOXN3O00409 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
FOXN3O00409 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
FOXN3O00409 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
FOXN3O00409 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
FOXN3O00409 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
FOXN3O00409 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
FOXN3O00409 FAM197Y1-201ENST00000421178 764 ntBASIC20.32■□□□□ 0.84
FOXN3O00409 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC20.32■□□□□ 0.84
FOXN3O00409 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
FOXN3O00409 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC20.32■□□□□ 0.84
FOXN3O00409 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
FOXN3O00409 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC20.32■□□□□ 0.84
FOXN3O00409 AC026271.3-201ENST00000571884 352 ntBASIC20.32■□□□□ 0.84
FOXN3O00409 AC011298.2-201ENST00000617989 482 ntBASIC20.32■□□□□ 0.84
FOXN3O00409 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC20.32■□□□□ 0.84
FOXN3O00409 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC20.32■□□□□ 0.84
FOXN3O00409 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC20.32■□□□□ 0.84
FOXN3O00409 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
FOXN3O00409 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms