Protein–RNA interactions for Protein: A0A087WT01

TRAV27, T-cell receptor alpha variable 27 (Fragment), humanhuman

Predictions only

Length 109 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV27A0A087WT01 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC17.24■□□□□ 0.35
TRAV27A0A087WT01 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRAV27A0A087WT01 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
TRAV27A0A087WT01 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC17.24■□□□□ 0.35
TRAV27A0A087WT01 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
TRAV27A0A087WT01 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
TRAV27A0A087WT01 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC17.24■□□□□ 0.35
TRAV27A0A087WT01 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRAV27A0A087WT01 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
TRAV27A0A087WT01 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
TRAV27A0A087WT01 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC17.24■□□□□ 0.35
TRAV27A0A087WT01 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC17.24■□□□□ 0.35
TRAV27A0A087WT01 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRAV27A0A087WT01 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC17.24■□□□□ 0.35
TRAV27A0A087WT01 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
TRAV27A0A087WT01 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
TRAV27A0A087WT01 AL160286.2-201ENST00000567150 934 ntBASIC17.24■□□□□ 0.35
TRAV27A0A087WT01 AC004264.1-201ENST00000608354 794 ntBASIC17.24■□□□□ 0.35
TRAV27A0A087WT01 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC17.24■□□□□ 0.35
TRAV27A0A087WT01 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC17.24■□□□□ 0.35
TRAV27A0A087WT01 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
TRAV27A0A087WT01 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRAV27A0A087WT01 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
TRAV27A0A087WT01 GOLGA6L5P-202ENST00000515341 1828 ntBASIC17.24■□□□□ 0.35
TRAV27A0A087WT01 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRAV27A0A087WT01 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
TRAV27A0A087WT01 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
TRAV27A0A087WT01 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC17.23■□□□□ 0.35
TRAV27A0A087WT01 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRAV27A0A087WT01 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC17.23■□□□□ 0.35
TRAV27A0A087WT01 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRAV27A0A087WT01 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC17.23■□□□□ 0.35
TRAV27A0A087WT01 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
TRAV27A0A087WT01 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC17.23■□□□□ 0.35
TRAV27A0A087WT01 KRT17P3-201ENST00000420566 1262 ntBASIC17.23■□□□□ 0.35
TRAV27A0A087WT01 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC17.23■□□□□ 0.35
TRAV27A0A087WT01 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC17.23■□□□□ 0.35
TRAV27A0A087WT01 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC17.23■□□□□ 0.35
TRAV27A0A087WT01 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC17.23■□□□□ 0.35
TRAV27A0A087WT01 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
TRAV27A0A087WT01 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC17.23■□□□□ 0.35
TRAV27A0A087WT01 MTDHP1-201ENST00000605323 784 ntBASIC17.23■□□□□ 0.35
TRAV27A0A087WT01 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC17.23■□□□□ 0.35
TRAV27A0A087WT01 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
TRAV27A0A087WT01 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRAV27A0A087WT01 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRAV27A0A087WT01 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC17.23■□□□□ 0.35
TRAV27A0A087WT01 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRAV27A0A087WT01 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC17.23■□□□□ 0.35
TRAV27A0A087WT01 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRAV27A0A087WT01 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC17.23■□□□□ 0.35
TRAV27A0A087WT01 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC17.23■□□□□ 0.35
TRAV27A0A087WT01 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC17.23■□□□□ 0.35
TRAV27A0A087WT01 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRAV27A0A087WT01 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC17.23■□□□□ 0.35
TRAV27A0A087WT01 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC17.23■□□□□ 0.35
TRAV27A0A087WT01 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRAV27A0A087WT01 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRAV27A0A087WT01 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC17.22■□□□□ 0.35
TRAV27A0A087WT01 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRAV27A0A087WT01 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRAV27A0A087WT01 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
TRAV27A0A087WT01 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC17.22■□□□□ 0.35
TRAV27A0A087WT01 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRAV27A0A087WT01 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRAV27A0A087WT01 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRAV27A0A087WT01 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRAV27A0A087WT01 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRAV27A0A087WT01 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRAV27A0A087WT01 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRAV27A0A087WT01 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRAV27A0A087WT01 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC17.22■□□□□ 0.35
TRAV27A0A087WT01 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
TRAV27A0A087WT01 AC026366.1-201ENST00000488803 879 ntBASIC17.22■□□□□ 0.35
TRAV27A0A087WT01 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
TRAV27A0A087WT01 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
TRAV27A0A087WT01 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC17.22■□□□□ 0.35
TRAV27A0A087WT01 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
TRAV27A0A087WT01 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC17.22■□□□□ 0.35
TRAV27A0A087WT01 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC17.22■□□□□ 0.35
TRAV27A0A087WT01 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRAV27A0A087WT01 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
TRAV27A0A087WT01 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
TRAV27A0A087WT01 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC17.22■□□□□ 0.35
TRAV27A0A087WT01 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRAV27A0A087WT01 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC17.22■□□□□ 0.35
TRAV27A0A087WT01 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC17.22■□□□□ 0.35
TRAV27A0A087WT01 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRAV27A0A087WT01 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC17.22■□□□□ 0.35
TRAV27A0A087WT01 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRAV27A0A087WT01 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRAV27A0A087WT01 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRAV27A0A087WT01 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
TRAV27A0A087WT01 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
TRAV27A0A087WT01 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC17.22■□□□□ 0.35
TRAV27A0A087WT01 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
TRAV27A0A087WT01 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
TRAV27A0A087WT01 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
TRAV27A0A087WT01 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRAV27A0A087WT01 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms