Protein–RNA interactions for Protein: Q9BXY4

RSPO3, R-spondin-3, humanhuman

Predicted RBP Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RSPO3Q9BXY4 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC17.52■□□□□ 0.4
RSPO3Q9BXY4 MIR4651-201ENST00000582622 73 ntBASIC17.52■□□□□ 0.4
RSPO3Q9BXY4 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
RSPO3Q9BXY4 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC17.52■□□□□ 0.4
RSPO3Q9BXY4 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC17.52■□□□□ 0.4
RSPO3Q9BXY4 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
RSPO3Q9BXY4 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
RSPO3Q9BXY4 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.39
RSPO3Q9BXY4 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
RSPO3Q9BXY4 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
RSPO3Q9BXY4 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
RSPO3Q9BXY4 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
RSPO3Q9BXY4 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC17.52■□□□□ 0.39
RSPO3Q9BXY4 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC17.52■□□□□ 0.39
RSPO3Q9BXY4 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
RSPO3Q9BXY4 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
RSPO3Q9BXY4 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC17.52■□□□□ 0.39
RSPO3Q9BXY4 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
RSPO3Q9BXY4 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
RSPO3Q9BXY4 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
RSPO3Q9BXY4 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
RSPO3Q9BXY4 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
RSPO3Q9BXY4 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC17.51■□□□□ 0.39
RSPO3Q9BXY4 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
RSPO3Q9BXY4 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
RSPO3Q9BXY4 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
RSPO3Q9BXY4 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
RSPO3Q9BXY4 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
RSPO3Q9BXY4 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
RSPO3Q9BXY4 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
RSPO3Q9BXY4 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC17.51■□□□□ 0.39
RSPO3Q9BXY4 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
RSPO3Q9BXY4 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
RSPO3Q9BXY4 KRT8P11-201ENST00000409686 1436 ntBASIC17.51■□□□□ 0.39
RSPO3Q9BXY4 KRT16P5-201ENST00000455284 522 ntBASIC17.51■□□□□ 0.39
RSPO3Q9BXY4 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC17.51■□□□□ 0.39
RSPO3Q9BXY4 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC17.51■□□□□ 0.39
RSPO3Q9BXY4 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC17.51■□□□□ 0.39
RSPO3Q9BXY4 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC17.51■□□□□ 0.39
RSPO3Q9BXY4 AC004264.1-201ENST00000608354 794 ntBASIC17.51■□□□□ 0.39
RSPO3Q9BXY4 AC073648.6-201ENST00000641589 218 ntBASIC17.51■□□□□ 0.39
RSPO3Q9BXY4 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC17.51■□□□□ 0.39
RSPO3Q9BXY4 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC17.51■□□□□ 0.39
RSPO3Q9BXY4 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC17.51■□□□□ 0.39
RSPO3Q9BXY4 AL390961.4-201ENST00000623958 2535 ntBASIC17.51■□□□□ 0.39
RSPO3Q9BXY4 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
RSPO3Q9BXY4 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC17.51■□□□□ 0.39
RSPO3Q9BXY4 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
RSPO3Q9BXY4 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC17.5■□□□□ 0.39
RSPO3Q9BXY4 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
RSPO3Q9BXY4 AL354751.1-201ENST00000412768 1863 ntBASIC17.5■□□□□ 0.39
RSPO3Q9BXY4 AC126763.1-201ENST00000552015 2118 ntBASIC17.5■□□□□ 0.39
RSPO3Q9BXY4 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
RSPO3Q9BXY4 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC17.5■□□□□ 0.39
RSPO3Q9BXY4 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
RSPO3Q9BXY4 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
RSPO3Q9BXY4 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC17.5■□□□□ 0.39
RSPO3Q9BXY4 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
RSPO3Q9BXY4 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC17.5■□□□□ 0.39
RSPO3Q9BXY4 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC17.5■□□□□ 0.39
RSPO3Q9BXY4 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC17.5■□□□□ 0.39
RSPO3Q9BXY4 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC17.5■□□□□ 0.39
RSPO3Q9BXY4 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC17.5■□□□□ 0.39
RSPO3Q9BXY4 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
RSPO3Q9BXY4 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC17.5■□□□□ 0.39
RSPO3Q9BXY4 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
RSPO3Q9BXY4 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC17.5■□□□□ 0.39
RSPO3Q9BXY4 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
RSPO3Q9BXY4 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
RSPO3Q9BXY4 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
RSPO3Q9BXY4 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
RSPO3Q9BXY4 EFTUD1P1-204ENST00000560401 1798 ntBASIC17.5■□□□□ 0.39
RSPO3Q9BXY4 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
RSPO3Q9BXY4 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
RSPO3Q9BXY4 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
RSPO3Q9BXY4 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
RSPO3Q9BXY4 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
RSPO3Q9BXY4 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC17.49■□□□□ 0.39
RSPO3Q9BXY4 RCC2P6-201ENST00000526625 1557 ntBASIC17.49■□□□□ 0.39
RSPO3Q9BXY4 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC17.49■□□□□ 0.39
RSPO3Q9BXY4 AL133373.2-201ENST00000623187 2828 ntBASIC17.49■□□□□ 0.39
RSPO3Q9BXY4 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC17.49■□□□□ 0.39
RSPO3Q9BXY4 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC17.49■□□□□ 0.39
RSPO3Q9BXY4 NFYC-AS1-201ENST00000606277 1687 ntBASIC17.49■□□□□ 0.39
RSPO3Q9BXY4 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
RSPO3Q9BXY4 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
RSPO3Q9BXY4 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
RSPO3Q9BXY4 MTMR9LP-203ENST00000426597 1545 ntBASIC17.49■□□□□ 0.39
RSPO3Q9BXY4 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC17.49■□□□□ 0.39
RSPO3Q9BXY4 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
RSPO3Q9BXY4 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
RSPO3Q9BXY4 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC17.49■□□□□ 0.39
RSPO3Q9BXY4 ISG20-202ENST00000379224 540 ntTSL 3 BASIC17.49■□□□□ 0.39
RSPO3Q9BXY4 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC17.49■□□□□ 0.39
RSPO3Q9BXY4 AC004980.1-204ENST00000429707 299 ntBASIC17.49■□□□□ 0.39
RSPO3Q9BXY4 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
RSPO3Q9BXY4 AC008040.2-201ENST00000461049 708 ntBASIC17.49■□□□□ 0.39
RSPO3Q9BXY4 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC17.49■□□□□ 0.39
RSPO3Q9BXY4 GLRB-205ENST00000512619 728 ntTSL 3 BASIC17.49■□□□□ 0.39
RSPO3Q9BXY4 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC17.49■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms