Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC17.83■□□□□ 0.44
CLIP4Q8N3C7 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
CLIP4Q8N3C7 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC17.82■□□□□ 0.44
CLIP4Q8N3C7 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CLIP4Q8N3C7 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC17.82■□□□□ 0.44
CLIP4Q8N3C7 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CLIP4Q8N3C7 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC17.82■□□□□ 0.44
CLIP4Q8N3C7 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CLIP4Q8N3C7 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC17.82■□□□□ 0.44
CLIP4Q8N3C7 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CLIP4Q8N3C7 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
CLIP4Q8N3C7 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
CLIP4Q8N3C7 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CLIP4Q8N3C7 TREX2-204ENST00000370212 861 ntTSL 5 BASIC17.82■□□□□ 0.44
CLIP4Q8N3C7 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
CLIP4Q8N3C7 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
CLIP4Q8N3C7 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CLIP4Q8N3C7 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC17.82■□□□□ 0.44
CLIP4Q8N3C7 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC17.82■□□□□ 0.44
CLIP4Q8N3C7 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CLIP4Q8N3C7 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CLIP4Q8N3C7 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC17.82■□□□□ 0.44
CLIP4Q8N3C7 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CLIP4Q8N3C7 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC17.82■□□□□ 0.44
CLIP4Q8N3C7 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC17.82■□□□□ 0.44
CLIP4Q8N3C7 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC17.81■□□□□ 0.44
CLIP4Q8N3C7 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC17.81■□□□□ 0.44
CLIP4Q8N3C7 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CLIP4Q8N3C7 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CLIP4Q8N3C7 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC17.81■□□□□ 0.44
CLIP4Q8N3C7 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CLIP4Q8N3C7 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC17.81■□□□□ 0.44
CLIP4Q8N3C7 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CLIP4Q8N3C7 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
CLIP4Q8N3C7 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
CLIP4Q8N3C7 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC17.81■□□□□ 0.44
CLIP4Q8N3C7 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC17.81■□□□□ 0.44
CLIP4Q8N3C7 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC17.81■□□□□ 0.44
CLIP4Q8N3C7 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CLIP4Q8N3C7 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CLIP4Q8N3C7 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CLIP4Q8N3C7 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CLIP4Q8N3C7 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CLIP4Q8N3C7 POM121L13P-201ENST00000422362 380 ntBASIC17.81■□□□□ 0.44
CLIP4Q8N3C7 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC17.81■□□□□ 0.44
CLIP4Q8N3C7 APTR-205ENST00000447009 902 ntTSL 2 BASIC17.81■□□□□ 0.44
CLIP4Q8N3C7 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC17.81■□□□□ 0.44
CLIP4Q8N3C7 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CLIP4Q8N3C7 AC008403.3-201ENST00000598924 454 ntBASIC17.81■□□□□ 0.44
CLIP4Q8N3C7 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC17.81■□□□□ 0.44
CLIP4Q8N3C7 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
CLIP4Q8N3C7 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC17.81■□□□□ 0.44
CLIP4Q8N3C7 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC17.81■□□□□ 0.44
CLIP4Q8N3C7 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CLIP4Q8N3C7 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
CLIP4Q8N3C7 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CLIP4Q8N3C7 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC17.81■□□□□ 0.44
CLIP4Q8N3C7 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC17.81■□□□□ 0.44
CLIP4Q8N3C7 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CLIP4Q8N3C7 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
CLIP4Q8N3C7 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
CLIP4Q8N3C7 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
CLIP4Q8N3C7 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC17.8■□□□□ 0.44
CLIP4Q8N3C7 PCDHB18P-201ENST00000524813 2368 ntBASIC17.8■□□□□ 0.44
CLIP4Q8N3C7 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC17.8■□□□□ 0.44
CLIP4Q8N3C7 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC17.8■□□□□ 0.44
CLIP4Q8N3C7 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CLIP4Q8N3C7 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC17.8■□□□□ 0.44
CLIP4Q8N3C7 ID1-201ENST00000376105 1233 ntBASIC17.8■□□□□ 0.44
CLIP4Q8N3C7 TUBB8P6-201ENST00000436895 1288 ntBASIC17.8■□□□□ 0.44
CLIP4Q8N3C7 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC17.8■□□□□ 0.44
CLIP4Q8N3C7 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CLIP4Q8N3C7 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CLIP4Q8N3C7 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
CLIP4Q8N3C7 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
CLIP4Q8N3C7 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CLIP4Q8N3C7 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC17.8■□□□□ 0.44
CLIP4Q8N3C7 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CLIP4Q8N3C7 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC17.8■□□□□ 0.44
CLIP4Q8N3C7 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
CLIP4Q8N3C7 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CLIP4Q8N3C7 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
CLIP4Q8N3C7 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CLIP4Q8N3C7 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC17.79■□□□□ 0.44
CLIP4Q8N3C7 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CLIP4Q8N3C7 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC17.79■□□□□ 0.44
CLIP4Q8N3C7 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC17.79■□□□□ 0.44
CLIP4Q8N3C7 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC17.79■□□□□ 0.44
CLIP4Q8N3C7 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC17.79■□□□□ 0.44
CLIP4Q8N3C7 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CLIP4Q8N3C7 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CLIP4Q8N3C7 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC17.79■□□□□ 0.44
CLIP4Q8N3C7 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
CLIP4Q8N3C7 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CLIP4Q8N3C7 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC17.79■□□□□ 0.44
CLIP4Q8N3C7 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC17.79■□□□□ 0.44
CLIP4Q8N3C7 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
CLIP4Q8N3C7 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CLIP4Q8N3C7 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CLIP4Q8N3C7 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms