Protein–RNA interactions for Protein: Q8IVM0

CCDC50, Coiled-coil domain-containing protein 50, humanhuman

Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC50Q8IVM0 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC50Q8IVM0 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC50Q8IVM0 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC50Q8IVM0 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC50Q8IVM0 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC50Q8IVM0 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC20.09■□□□□ 0.81
CCDC50Q8IVM0 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CCDC50Q8IVM0 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC20.08■□□□□ 0.81
CCDC50Q8IVM0 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
CCDC50Q8IVM0 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.81
CCDC50Q8IVM0 AC005332.8-201ENST00000622750 2735 ntBASIC20.08■□□□□ 0.81
CCDC50Q8IVM0 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.81
CCDC50Q8IVM0 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.81
CCDC50Q8IVM0 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC20.08■□□□□ 0.81
CCDC50Q8IVM0 TREX2-204ENST00000370212 861 ntTSL 5 BASIC20.08■□□□□ 0.81
CCDC50Q8IVM0 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
CCDC50Q8IVM0 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.81
CCDC50Q8IVM0 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC20.08■□□□□ 0.81
CCDC50Q8IVM0 RGMA-211ENST00000557420 989 ntTSL 3 BASIC20.08■□□□□ 0.81
CCDC50Q8IVM0 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC20.08■□□□□ 0.81
CCDC50Q8IVM0 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.81
CCDC50Q8IVM0 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
CCDC50Q8IVM0 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
CCDC50Q8IVM0 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
CCDC50Q8IVM0 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
CCDC50Q8IVM0 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
CCDC50Q8IVM0 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC20.08■□□□□ 0.8
CCDC50Q8IVM0 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC20.08■□□□□ 0.8
CCDC50Q8IVM0 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.8
CCDC50Q8IVM0 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.8
CCDC50Q8IVM0 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
CCDC50Q8IVM0 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
CCDC50Q8IVM0 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CCDC50Q8IVM0 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC20.07■□□□□ 0.8
CCDC50Q8IVM0 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC20.07■□□□□ 0.8
CCDC50Q8IVM0 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC20.07■□□□□ 0.8
CCDC50Q8IVM0 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CCDC50Q8IVM0 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC20.07■□□□□ 0.8
CCDC50Q8IVM0 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CCDC50Q8IVM0 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC20.07■□□□□ 0.8
CCDC50Q8IVM0 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CCDC50Q8IVM0 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC20.07■□□□□ 0.8
CCDC50Q8IVM0 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC20.07■□□□□ 0.8
CCDC50Q8IVM0 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CCDC50Q8IVM0 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CCDC50Q8IVM0 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC20.07■□□□□ 0.8
CCDC50Q8IVM0 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CCDC50Q8IVM0 AL355802.2-201ENST00000402069 882 ntBASIC20.07■□□□□ 0.8
CCDC50Q8IVM0 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
CCDC50Q8IVM0 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC20.07■□□□□ 0.8
CCDC50Q8IVM0 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC20.07■□□□□ 0.8
CCDC50Q8IVM0 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CCDC50Q8IVM0 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC20.07■□□□□ 0.8
CCDC50Q8IVM0 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC20.07■□□□□ 0.8
CCDC50Q8IVM0 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CCDC50Q8IVM0 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CCDC50Q8IVM0 CROCCP3-202ENST00000420820 1947 ntBASIC20.07■□□□□ 0.8
CCDC50Q8IVM0 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CCDC50Q8IVM0 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
CCDC50Q8IVM0 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CCDC50Q8IVM0 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC20.07■□□□□ 0.8
CCDC50Q8IVM0 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC20.06■□□□□ 0.8
CCDC50Q8IVM0 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC50Q8IVM0 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC20.06■□□□□ 0.8
CCDC50Q8IVM0 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC50Q8IVM0 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC20.06■□□□□ 0.8
CCDC50Q8IVM0 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC50Q8IVM0 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC50Q8IVM0 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC50Q8IVM0 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
CCDC50Q8IVM0 UNC93B4-201ENST00000505679 747 ntBASIC20.06■□□□□ 0.8
CCDC50Q8IVM0 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC50Q8IVM0 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC20.06■□□□□ 0.8
CCDC50Q8IVM0 AC142086.2-201ENST00000569753 217 ntBASIC20.06■□□□□ 0.8
CCDC50Q8IVM0 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC50Q8IVM0 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC20.06■□□□□ 0.8
CCDC50Q8IVM0 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC20.06■□□□□ 0.8
CCDC50Q8IVM0 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC20.06■□□□□ 0.8
CCDC50Q8IVM0 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
CCDC50Q8IVM0 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC50Q8IVM0 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC50Q8IVM0 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC50Q8IVM0 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC20.05■□□□□ 0.8
CCDC50Q8IVM0 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC20.05■□□□□ 0.8
CCDC50Q8IVM0 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC20.05■□□□□ 0.8
CCDC50Q8IVM0 AC007613.1-201ENST00000572811 2597 ntBASIC20.05■□□□□ 0.8
CCDC50Q8IVM0 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC50Q8IVM0 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC50Q8IVM0 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC50Q8IVM0 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
CCDC50Q8IVM0 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC50Q8IVM0 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC50Q8IVM0 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC20.05■□□□□ 0.8
CCDC50Q8IVM0 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
CCDC50Q8IVM0 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC20.05■□□□□ 0.8
CCDC50Q8IVM0 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
CCDC50Q8IVM0 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC50Q8IVM0 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC50Q8IVM0 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC50Q8IVM0 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC20.05■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 47.4 ms