Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
HDAC4P56524 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
HDAC4P56524 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
HDAC4P56524 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
HDAC4P56524 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
HDAC4P56524 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
HDAC4P56524 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
HDAC4P56524 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC19.9■□□□□ 0.78
HDAC4P56524 AP001412.1-201ENST00000608405 714 ntBASIC19.9■□□□□ 0.78
HDAC4P56524 MIR6786-201ENST00000616843 113 ntBASIC19.9■□□□□ 0.78
HDAC4P56524 AC011298.2-201ENST00000617989 482 ntBASIC19.9■□□□□ 0.78
HDAC4P56524 AC130371.2-201ENST00000619443 611 ntBASIC19.9■□□□□ 0.78
HDAC4P56524 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
HDAC4P56524 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC19.9■□□□□ 0.78
HDAC4P56524 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
HDAC4P56524 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
HDAC4P56524 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
HDAC4P56524 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
HDAC4P56524 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
HDAC4P56524 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
HDAC4P56524 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
HDAC4P56524 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
HDAC4P56524 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC19.89■□□□□ 0.78
HDAC4P56524 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC19.89■□□□□ 0.78
HDAC4P56524 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
HDAC4P56524 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
HDAC4P56524 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
HDAC4P56524 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
HDAC4P56524 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
HDAC4P56524 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
HDAC4P56524 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
HDAC4P56524 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
HDAC4P56524 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
HDAC4P56524 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
HDAC4P56524 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
HDAC4P56524 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
HDAC4P56524 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC19.89■□□□□ 0.77
HDAC4P56524 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC19.89■□□□□ 0.77
HDAC4P56524 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC19.89■□□□□ 0.77
HDAC4P56524 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
HDAC4P56524 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
HDAC4P56524 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC19.89■□□□□ 0.77
HDAC4P56524 NUDT16P1-203ENST00000513809 620 ntBASIC19.89■□□□□ 0.77
HDAC4P56524 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC19.89■□□□□ 0.77
HDAC4P56524 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC19.89■□□□□ 0.77
HDAC4P56524 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC19.89■□□□□ 0.77
HDAC4P56524 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC19.89■□□□□ 0.77
HDAC4P56524 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
HDAC4P56524 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
HDAC4P56524 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
HDAC4P56524 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
HDAC4P56524 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC19.88■□□□□ 0.77
HDAC4P56524 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
HDAC4P56524 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
HDAC4P56524 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC19.88■□□□□ 0.77
HDAC4P56524 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
HDAC4P56524 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
HDAC4P56524 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
HDAC4P56524 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
HDAC4P56524 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC19.88■□□□□ 0.77
HDAC4P56524 AC116562.2-201ENST00000507042 360 ntBASIC19.88■□□□□ 0.77
HDAC4P56524 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC19.88■□□□□ 0.77
HDAC4P56524 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC19.88■□□□□ 0.77
HDAC4P56524 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
HDAC4P56524 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
HDAC4P56524 AC138932.1-201ENST00000534164 6830 ntBASIC19.88■□□□□ 0.77
HDAC4P56524 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC19.88■□□□□ 0.77
HDAC4P56524 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
HDAC4P56524 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
HDAC4P56524 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
HDAC4P56524 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC19.87■□□□□ 0.77
HDAC4P56524 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
HDAC4P56524 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC19.87■□□□□ 0.77
HDAC4P56524 FSCN1P1-201ENST00000568912 1481 ntBASIC19.87■□□□□ 0.77
HDAC4P56524 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
HDAC4P56524 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
HDAC4P56524 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
HDAC4P56524 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
HDAC4P56524 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
HDAC4P56524 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
HDAC4P56524 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC19.87■□□□□ 0.77
HDAC4P56524 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
HDAC4P56524 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
HDAC4P56524 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
HDAC4P56524 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
HDAC4P56524 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
HDAC4P56524 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC19.87■□□□□ 0.77
HDAC4P56524 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC19.87■□□□□ 0.77
HDAC4P56524 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC19.87■□□□□ 0.77
HDAC4P56524 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC19.87■□□□□ 0.77
HDAC4P56524 AP006294.2-201ENST00000641667 209 ntBASIC19.87■□□□□ 0.77
HDAC4P56524 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC19.87■□□□□ 0.77
HDAC4P56524 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
HDAC4P56524 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
HDAC4P56524 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
HDAC4P56524 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
HDAC4P56524 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
HDAC4P56524 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
HDAC4P56524 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
HDAC4P56524 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms