Protein–RNA interactions for Protein: P35244

RPA3, Replication protein A 14 kDa subunit, humanhuman

Predicted RBP Predictions only

Length 121 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPA3P35244 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
RPA3P35244 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC19.24■□□□□ 0.67
RPA3P35244 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
RPA3P35244 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
RPA3P35244 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
RPA3P35244 IRX1P1-201ENST00000438849 1838 ntBASIC19.24■□□□□ 0.67
RPA3P35244 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
RPA3P35244 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
RPA3P35244 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC19.24■□□□□ 0.67
RPA3P35244 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC19.24■□□□□ 0.67
RPA3P35244 AP003097.1-201ENST00000530657 1135 ntBASIC19.24■□□□□ 0.67
RPA3P35244 AC008687.6-201ENST00000596318 630 ntBASIC19.24■□□□□ 0.67
RPA3P35244 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
RPA3P35244 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC19.24■□□□□ 0.67
RPA3P35244 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
RPA3P35244 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC19.24■□□□□ 0.67
RPA3P35244 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
RPA3P35244 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
RPA3P35244 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC19.24■□□□□ 0.67
RPA3P35244 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
RPA3P35244 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC19.24■□□□□ 0.67
RPA3P35244 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC19.24■□□□□ 0.67
RPA3P35244 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
RPA3P35244 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC19.23■□□□□ 0.67
RPA3P35244 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
RPA3P35244 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC19.23■□□□□ 0.67
RPA3P35244 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
RPA3P35244 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
RPA3P35244 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
RPA3P35244 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
RPA3P35244 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC19.23■□□□□ 0.67
RPA3P35244 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
RPA3P35244 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC19.23■□□□□ 0.67
RPA3P35244 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC19.23■□□□□ 0.67
RPA3P35244 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
RPA3P35244 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
RPA3P35244 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
RPA3P35244 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
RPA3P35244 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
RPA3P35244 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
RPA3P35244 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC19.23■□□□□ 0.67
RPA3P35244 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
RPA3P35244 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
RPA3P35244 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
RPA3P35244 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
RPA3P35244 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC19.23■□□□□ 0.67
RPA3P35244 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
RPA3P35244 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
RPA3P35244 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
RPA3P35244 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
RPA3P35244 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
RPA3P35244 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
RPA3P35244 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
RPA3P35244 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC19.22■□□□□ 0.67
RPA3P35244 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC19.22■□□□□ 0.67
RPA3P35244 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC19.22■□□□□ 0.67
RPA3P35244 NOC2LP2-201ENST00000407594 1944 ntBASIC19.22■□□□□ 0.67
RPA3P35244 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
RPA3P35244 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
RPA3P35244 CALM3-202ENST00000391918 702 ntTSL 2 BASIC19.22■□□□□ 0.67
RPA3P35244 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC19.22■□□□□ 0.67
RPA3P35244 RPS2P52-201ENST00000469610 820 ntBASIC19.22■□□□□ 0.67
RPA3P35244 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
RPA3P35244 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
RPA3P35244 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
RPA3P35244 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
RPA3P35244 LTB4R2-202ENST00000528054 3092 ntBASIC19.22■□□□□ 0.67
RPA3P35244 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
RPA3P35244 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
RPA3P35244 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
RPA3P35244 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
RPA3P35244 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
RPA3P35244 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
RPA3P35244 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
RPA3P35244 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC19.21■□□□□ 0.67
RPA3P35244 AC104417.2-201ENST00000562989 1793 ntBASIC19.21■□□□□ 0.67
RPA3P35244 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
RPA3P35244 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
RPA3P35244 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC19.21■□□□□ 0.67
RPA3P35244 AC068880.1-201ENST00000507289 2297 ntBASIC19.21■□□□□ 0.67
RPA3P35244 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
RPA3P35244 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
RPA3P35244 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
RPA3P35244 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
RPA3P35244 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
RPA3P35244 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
RPA3P35244 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
RPA3P35244 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
RPA3P35244 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
RPA3P35244 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC19.21■□□□□ 0.67
RPA3P35244 AC026366.1-201ENST00000488803 879 ntBASIC19.21■□□□□ 0.67
RPA3P35244 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC19.21■□□□□ 0.67
RPA3P35244 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC19.21■□□□□ 0.67
RPA3P35244 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC19.21■□□□□ 0.67
RPA3P35244 AC120498.8-201ENST00000614275 531 ntBASIC19.21■□□□□ 0.67
RPA3P35244 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
RPA3P35244 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
RPA3P35244 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
RPA3P35244 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
RPA3P35244 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms