Protein–RNA interactions for Protein: O60858

TRIM13, E3 ubiquitin-protein ligase TRIM13, humanhuman

Predictions only

Length 407 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM13O60858 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC18.75■□□□□ 0.59
TRIM13O60858 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
TRIM13O60858 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
TRIM13O60858 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
TRIM13O60858 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
TRIM13O60858 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC18.75■□□□□ 0.59
TRIM13O60858 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
TRIM13O60858 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
TRIM13O60858 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
TRIM13O60858 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
TRIM13O60858 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
TRIM13O60858 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
TRIM13O60858 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC18.75■□□□□ 0.59
TRIM13O60858 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC18.75■□□□□ 0.59
TRIM13O60858 CROCCP5-201ENST00000436658 830 ntBASIC18.75■□□□□ 0.59
TRIM13O60858 GATS-209ENST00000454084 1030 ntTSL 3 BASIC18.75■□□□□ 0.59
TRIM13O60858 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC18.75■□□□□ 0.59
TRIM13O60858 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC18.75■□□□□ 0.59
TRIM13O60858 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC18.75■□□□□ 0.59
TRIM13O60858 AC083906.2-201ENST00000511578 360 ntBASIC18.75■□□□□ 0.59
TRIM13O60858 BET1L-207ENST00000529614 560 ntTSL 5 BASIC18.75■□□□□ 0.59
TRIM13O60858 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC18.75■□□□□ 0.59
TRIM13O60858 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC18.75■□□□□ 0.59
TRIM13O60858 AL121832.2-201ENST00000610979 668 ntBASIC18.75■□□□□ 0.59
TRIM13O60858 HLA-B-256ENST00000639848 1089 ntBASIC18.75■□□□□ 0.59
TRIM13O60858 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
TRIM13O60858 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
TRIM13O60858 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
TRIM13O60858 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
TRIM13O60858 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
TRIM13O60858 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC18.75■□□□□ 0.59
TRIM13O60858 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
TRIM13O60858 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
TRIM13O60858 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
TRIM13O60858 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
TRIM13O60858 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
TRIM13O60858 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
TRIM13O60858 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
TRIM13O60858 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC18.74■□□□□ 0.59
TRIM13O60858 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
TRIM13O60858 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC18.74■□□□□ 0.59
TRIM13O60858 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
TRIM13O60858 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
TRIM13O60858 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
TRIM13O60858 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
TRIM13O60858 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
TRIM13O60858 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
TRIM13O60858 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
TRIM13O60858 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
TRIM13O60858 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC18.74■□□□□ 0.59
TRIM13O60858 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
TRIM13O60858 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC18.74■□□□□ 0.59
TRIM13O60858 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
TRIM13O60858 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
TRIM13O60858 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC18.74■□□□□ 0.59
TRIM13O60858 AC120498.8-201ENST00000614275 531 ntBASIC18.74■□□□□ 0.59
TRIM13O60858 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
TRIM13O60858 AL121829.2-201ENST00000620908 328 ntBASIC18.74■□□□□ 0.59
TRIM13O60858 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
TRIM13O60858 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
TRIM13O60858 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC18.74■□□□□ 0.59
TRIM13O60858 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
TRIM13O60858 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC18.74■□□□□ 0.59
TRIM13O60858 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
TRIM13O60858 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC18.74■□□□□ 0.59
TRIM13O60858 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC18.74■□□□□ 0.59
TRIM13O60858 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
TRIM13O60858 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC18.74■□□□□ 0.59
TRIM13O60858 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC18.74■□□□□ 0.59
TRIM13O60858 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC18.74■□□□□ 0.59
TRIM13O60858 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
TRIM13O60858 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
TRIM13O60858 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
TRIM13O60858 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC18.73■□□□□ 0.59
TRIM13O60858 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC18.73■□□□□ 0.59
TRIM13O60858 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
TRIM13O60858 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
TRIM13O60858 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
TRIM13O60858 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
TRIM13O60858 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
TRIM13O60858 TREX2-204ENST00000370212 861 ntTSL 5 BASIC18.73■□□□□ 0.59
TRIM13O60858 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
TRIM13O60858 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
TRIM13O60858 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC18.73■□□□□ 0.59
TRIM13O60858 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
TRIM13O60858 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
TRIM13O60858 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC18.73■□□□□ 0.59
TRIM13O60858 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC18.73■□□□□ 0.59
TRIM13O60858 IKBKGP1-201ENST00000612193 1073 ntBASIC18.73■□□□□ 0.59
TRIM13O60858 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
TRIM13O60858 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC18.73■□□□□ 0.59
TRIM13O60858 HCG11-201ENST00000411553 5696 ntBASIC18.73■□□□□ 0.59
TRIM13O60858 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
TRIM13O60858 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC18.73■□□□□ 0.59
TRIM13O60858 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
TRIM13O60858 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
TRIM13O60858 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
TRIM13O60858 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC18.72■□□□□ 0.59
TRIM13O60858 COBL-210ENST00000632460 1941 ntTSL 5 BASIC18.72■□□□□ 0.59
TRIM13O60858 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC18.72■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms