Protein–RNA interactions for Protein: Q9Y6N9

USH1C, Harmonin, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH1CQ9Y6N9 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
USH1CQ9Y6N9 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC18.99■□□□□ 0.63
USH1CQ9Y6N9 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
USH1CQ9Y6N9 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
USH1CQ9Y6N9 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
USH1CQ9Y6N9 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC18.99■□□□□ 0.63
USH1CQ9Y6N9 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
USH1CQ9Y6N9 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC18.99■□□□□ 0.63
USH1CQ9Y6N9 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
USH1CQ9Y6N9 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
USH1CQ9Y6N9 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC18.99■□□□□ 0.63
USH1CQ9Y6N9 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC18.99■□□□□ 0.63
USH1CQ9Y6N9 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
USH1CQ9Y6N9 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
USH1CQ9Y6N9 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
USH1CQ9Y6N9 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC18.99■□□□□ 0.63
USH1CQ9Y6N9 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
USH1CQ9Y6N9 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
USH1CQ9Y6N9 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
USH1CQ9Y6N9 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC18.99■□□□□ 0.63
USH1CQ9Y6N9 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
USH1CQ9Y6N9 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
USH1CQ9Y6N9 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
USH1CQ9Y6N9 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC18.99■□□□□ 0.63
USH1CQ9Y6N9 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
USH1CQ9Y6N9 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
USH1CQ9Y6N9 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
USH1CQ9Y6N9 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
USH1CQ9Y6N9 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
USH1CQ9Y6N9 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
USH1CQ9Y6N9 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC18.98■□□□□ 0.63
USH1CQ9Y6N9 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
USH1CQ9Y6N9 IRX1P1-201ENST00000438849 1838 ntBASIC18.98■□□□□ 0.63
USH1CQ9Y6N9 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC18.98■□□□□ 0.63
USH1CQ9Y6N9 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
USH1CQ9Y6N9 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC18.98■□□□□ 0.63
USH1CQ9Y6N9 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
USH1CQ9Y6N9 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
USH1CQ9Y6N9 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
USH1CQ9Y6N9 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC18.98■□□□□ 0.63
USH1CQ9Y6N9 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
USH1CQ9Y6N9 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
USH1CQ9Y6N9 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
USH1CQ9Y6N9 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
USH1CQ9Y6N9 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC18.97■□□□□ 0.63
USH1CQ9Y6N9 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
USH1CQ9Y6N9 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
USH1CQ9Y6N9 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
USH1CQ9Y6N9 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
USH1CQ9Y6N9 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
USH1CQ9Y6N9 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
USH1CQ9Y6N9 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
USH1CQ9Y6N9 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC18.97■□□□□ 0.63
USH1CQ9Y6N9 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
USH1CQ9Y6N9 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
USH1CQ9Y6N9 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC18.97■□□□□ 0.63
USH1CQ9Y6N9 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC18.97■□□□□ 0.63
USH1CQ9Y6N9 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC18.97■□□□□ 0.63
USH1CQ9Y6N9 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC18.97■□□□□ 0.63
USH1CQ9Y6N9 CYP2T3P-201ENST00000601990 817 ntBASIC18.97■□□□□ 0.63
USH1CQ9Y6N9 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC18.97■□□□□ 0.63
USH1CQ9Y6N9 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
USH1CQ9Y6N9 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC18.97■□□□□ 0.63
USH1CQ9Y6N9 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
USH1CQ9Y6N9 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
USH1CQ9Y6N9 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
USH1CQ9Y6N9 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
USH1CQ9Y6N9 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
USH1CQ9Y6N9 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
USH1CQ9Y6N9 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
USH1CQ9Y6N9 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
USH1CQ9Y6N9 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC18.96■□□□□ 0.63
USH1CQ9Y6N9 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC18.96■□□□□ 0.63
USH1CQ9Y6N9 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
USH1CQ9Y6N9 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
USH1CQ9Y6N9 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
USH1CQ9Y6N9 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
USH1CQ9Y6N9 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
USH1CQ9Y6N9 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
USH1CQ9Y6N9 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
USH1CQ9Y6N9 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC18.96■□□□□ 0.63
USH1CQ9Y6N9 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC18.96■□□□□ 0.63
USH1CQ9Y6N9 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC18.96■□□□□ 0.63
USH1CQ9Y6N9 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
USH1CQ9Y6N9 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC18.96■□□□□ 0.63
USH1CQ9Y6N9 ZNF815P-204ENST00000434898 1737 ntBASIC18.96■□□□□ 0.63
USH1CQ9Y6N9 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
USH1CQ9Y6N9 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC18.96■□□□□ 0.63
USH1CQ9Y6N9 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC18.96■□□□□ 0.63
USH1CQ9Y6N9 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC18.96■□□□□ 0.63
USH1CQ9Y6N9 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
USH1CQ9Y6N9 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
USH1CQ9Y6N9 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
USH1CQ9Y6N9 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
USH1CQ9Y6N9 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC18.96■□□□□ 0.63
USH1CQ9Y6N9 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
USH1CQ9Y6N9 CD276-201ENST00000318424 2738 ntTSL 5 BASIC18.95■□□□□ 0.62
USH1CQ9Y6N9 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC18.95■□□□□ 0.62
USH1CQ9Y6N9 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC18.95■□□□□ 0.62
USH1CQ9Y6N9 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms