Protein–RNA interactions for Protein: Q9Y3T6

R3HCC1, R3H and coiled-coil domain-containing protein 1, humanhuman

Known RBP Predictions only

Length 440 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
R3HCC1Q9Y3T6 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
R3HCC1Q9Y3T6 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
R3HCC1Q9Y3T6 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
R3HCC1Q9Y3T6 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
R3HCC1Q9Y3T6 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
R3HCC1Q9Y3T6 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
R3HCC1Q9Y3T6 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC21.76■■□□□ 1.07
R3HCC1Q9Y3T6 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC21.76■■□□□ 1.07
R3HCC1Q9Y3T6 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC21.76■■□□□ 1.07
R3HCC1Q9Y3T6 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
R3HCC1Q9Y3T6 AC060766.5-201ENST00000590539 871 ntBASIC21.76■■□□□ 1.07
R3HCC1Q9Y3T6 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
R3HCC1Q9Y3T6 INO80E-214ENST00000620599 515 ntTSL 2 BASIC21.76■■□□□ 1.07
R3HCC1Q9Y3T6 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
R3HCC1Q9Y3T6 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC21.76■■□□□ 1.07
R3HCC1Q9Y3T6 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
R3HCC1Q9Y3T6 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
R3HCC1Q9Y3T6 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
R3HCC1Q9Y3T6 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
R3HCC1Q9Y3T6 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
R3HCC1Q9Y3T6 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
R3HCC1Q9Y3T6 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC21.76■■□□□ 1.07
R3HCC1Q9Y3T6 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
R3HCC1Q9Y3T6 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
R3HCC1Q9Y3T6 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
R3HCC1Q9Y3T6 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC21.75■■□□□ 1.07
R3HCC1Q9Y3T6 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
R3HCC1Q9Y3T6 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
R3HCC1Q9Y3T6 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC21.75■■□□□ 1.07
R3HCC1Q9Y3T6 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC21.75■■□□□ 1.07
R3HCC1Q9Y3T6 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC21.75■■□□□ 1.07
R3HCC1Q9Y3T6 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC21.75■■□□□ 1.07
R3HCC1Q9Y3T6 TBCB-214ENST00000629269 413 ntTSL 5 BASIC21.75■■□□□ 1.07
R3HCC1Q9Y3T6 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
R3HCC1Q9Y3T6 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC21.75■■□□□ 1.07
R3HCC1Q9Y3T6 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
R3HCC1Q9Y3T6 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
R3HCC1Q9Y3T6 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC21.75■■□□□ 1.07
R3HCC1Q9Y3T6 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
R3HCC1Q9Y3T6 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
R3HCC1Q9Y3T6 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC21.75■■□□□ 1.07
R3HCC1Q9Y3T6 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
R3HCC1Q9Y3T6 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
R3HCC1Q9Y3T6 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC21.75■■□□□ 1.07
R3HCC1Q9Y3T6 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC21.75■■□□□ 1.07
R3HCC1Q9Y3T6 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
R3HCC1Q9Y3T6 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
R3HCC1Q9Y3T6 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC21.74■■□□□ 1.07
R3HCC1Q9Y3T6 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC21.74■■□□□ 1.07
R3HCC1Q9Y3T6 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
R3HCC1Q9Y3T6 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
R3HCC1Q9Y3T6 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
R3HCC1Q9Y3T6 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC21.74■■□□□ 1.07
R3HCC1Q9Y3T6 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC21.74■■□□□ 1.07
R3HCC1Q9Y3T6 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC21.74■■□□□ 1.07
R3HCC1Q9Y3T6 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
R3HCC1Q9Y3T6 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC21.74■■□□□ 1.07
R3HCC1Q9Y3T6 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
R3HCC1Q9Y3T6 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
R3HCC1Q9Y3T6 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
R3HCC1Q9Y3T6 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
R3HCC1Q9Y3T6 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC21.74■■□□□ 1.07
R3HCC1Q9Y3T6 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC21.74■■□□□ 1.07
R3HCC1Q9Y3T6 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC21.74■■□□□ 1.07
R3HCC1Q9Y3T6 REXO2-208ENST00000539754 791 ntTSL 2 BASIC21.74■■□□□ 1.07
R3HCC1Q9Y3T6 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
R3HCC1Q9Y3T6 TP73-202ENST00000354437 2140 ntTSL 5 BASIC21.74■■□□□ 1.07
R3HCC1Q9Y3T6 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC21.74■■□□□ 1.07
R3HCC1Q9Y3T6 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC21.74■■□□□ 1.07
R3HCC1Q9Y3T6 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC21.74■■□□□ 1.07
R3HCC1Q9Y3T6 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
R3HCC1Q9Y3T6 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC21.73■■□□□ 1.07
R3HCC1Q9Y3T6 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
R3HCC1Q9Y3T6 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
R3HCC1Q9Y3T6 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
R3HCC1Q9Y3T6 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
R3HCC1Q9Y3T6 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
R3HCC1Q9Y3T6 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
R3HCC1Q9Y3T6 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC21.73■■□□□ 1.07
R3HCC1Q9Y3T6 HLA-G-202ENST00000376815 851 ntBASIC21.73■■□□□ 1.07
R3HCC1Q9Y3T6 HLA-G-203ENST00000376818 1127 ntBASIC21.73■■□□□ 1.07
R3HCC1Q9Y3T6 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC21.73■■□□□ 1.07
R3HCC1Q9Y3T6 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC21.73■■□□□ 1.07
R3HCC1Q9Y3T6 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC21.73■■□□□ 1.07
R3HCC1Q9Y3T6 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC21.73■■□□□ 1.07
R3HCC1Q9Y3T6 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC21.73■■□□□ 1.07
R3HCC1Q9Y3T6 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC21.73■■□□□ 1.07
R3HCC1Q9Y3T6 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
R3HCC1Q9Y3T6 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC21.73■■□□□ 1.07
R3HCC1Q9Y3T6 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC21.73■■□□□ 1.07
R3HCC1Q9Y3T6 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
R3HCC1Q9Y3T6 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
R3HCC1Q9Y3T6 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC21.73■■□□□ 1.07
R3HCC1Q9Y3T6 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC21.73■■□□□ 1.07
R3HCC1Q9Y3T6 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC21.73■■□□□ 1.07
R3HCC1Q9Y3T6 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
R3HCC1Q9Y3T6 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC21.72■■□□□ 1.07
R3HCC1Q9Y3T6 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC21.72■■□□□ 1.07
R3HCC1Q9Y3T6 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC21.72■■□□□ 1.07
R3HCC1Q9Y3T6 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms