Protein–RNA interactions for Protein: Q9NWW5

CLN6, Ceroid-lipofuscinosis neuronal protein 6, humanhuman

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6Q9NWW5 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CLN6Q9NWW5 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
CLN6Q9NWW5 TFP1-202ENST00000475455 1573 ntBASIC17.41■□□□□ 0.38
CLN6Q9NWW5 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CLN6Q9NWW5 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CLN6Q9NWW5 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CLN6Q9NWW5 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
CLN6Q9NWW5 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CLN6Q9NWW5 AC016769.1-201ENST00000409132 1010 ntBASIC17.41■□□□□ 0.38
CLN6Q9NWW5 AL355472.2-201ENST00000422958 438 ntBASIC17.41■□□□□ 0.38
CLN6Q9NWW5 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC17.41■□□□□ 0.38
CLN6Q9NWW5 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
CLN6Q9NWW5 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CLN6Q9NWW5 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
CLN6Q9NWW5 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CLN6Q9NWW5 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CLN6Q9NWW5 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC17.41■□□□□ 0.38
CLN6Q9NWW5 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC17.41■□□□□ 0.38
CLN6Q9NWW5 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CLN6Q9NWW5 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC17.41■□□□□ 0.38
CLN6Q9NWW5 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CLN6Q9NWW5 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CLN6Q9NWW5 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
CLN6Q9NWW5 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CLN6Q9NWW5 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CLN6Q9NWW5 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
CLN6Q9NWW5 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CLN6Q9NWW5 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
CLN6Q9NWW5 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC17.41■□□□□ 0.38
CLN6Q9NWW5 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC17.4■□□□□ 0.38
CLN6Q9NWW5 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
CLN6Q9NWW5 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC17.4■□□□□ 0.38
CLN6Q9NWW5 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC17.4■□□□□ 0.38
CLN6Q9NWW5 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC17.4■□□□□ 0.38
CLN6Q9NWW5 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CLN6Q9NWW5 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC17.4■□□□□ 0.38
CLN6Q9NWW5 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC17.4■□□□□ 0.38
CLN6Q9NWW5 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
CLN6Q9NWW5 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CLN6Q9NWW5 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CLN6Q9NWW5 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
CLN6Q9NWW5 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CLN6Q9NWW5 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CLN6Q9NWW5 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CLN6Q9NWW5 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC17.4■□□□□ 0.38
CLN6Q9NWW5 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC17.4■□□□□ 0.38
CLN6Q9NWW5 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
CLN6Q9NWW5 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC17.4■□□□□ 0.38
CLN6Q9NWW5 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC17.4■□□□□ 0.38
CLN6Q9NWW5 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC17.4■□□□□ 0.38
CLN6Q9NWW5 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC17.4■□□□□ 0.38
CLN6Q9NWW5 PLD4-205ENST00000553861 667 ntTSL 2 BASIC17.4■□□□□ 0.38
CLN6Q9NWW5 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC17.4■□□□□ 0.38
CLN6Q9NWW5 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CLN6Q9NWW5 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
CLN6Q9NWW5 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CLN6Q9NWW5 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC17.4■□□□□ 0.38
CLN6Q9NWW5 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CLN6Q9NWW5 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CLN6Q9NWW5 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC17.4■□□□□ 0.38
CLN6Q9NWW5 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC17.39■□□□□ 0.38
CLN6Q9NWW5 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
CLN6Q9NWW5 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
CLN6Q9NWW5 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CLN6Q9NWW5 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC17.39■□□□□ 0.37
CLN6Q9NWW5 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CLN6Q9NWW5 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CLN6Q9NWW5 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CLN6Q9NWW5 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CLN6Q9NWW5 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC17.39■□□□□ 0.37
CLN6Q9NWW5 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CLN6Q9NWW5 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
CLN6Q9NWW5 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CLN6Q9NWW5 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CLN6Q9NWW5 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC17.39■□□□□ 0.37
CLN6Q9NWW5 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC17.39■□□□□ 0.37
CLN6Q9NWW5 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC17.39■□□□□ 0.37
CLN6Q9NWW5 MIR6821-201ENST00000617625 74 ntBASIC17.39■□□□□ 0.37
CLN6Q9NWW5 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC17.39■□□□□ 0.37
CLN6Q9NWW5 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC17.39■□□□□ 0.37
CLN6Q9NWW5 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC17.39■□□□□ 0.37
CLN6Q9NWW5 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
CLN6Q9NWW5 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CLN6Q9NWW5 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CLN6Q9NWW5 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC17.39■□□□□ 0.37
CLN6Q9NWW5 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CLN6Q9NWW5 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
CLN6Q9NWW5 AC068880.1-201ENST00000507289 2297 ntBASIC17.38■□□□□ 0.37
CLN6Q9NWW5 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CLN6Q9NWW5 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CLN6Q9NWW5 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
CLN6Q9NWW5 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC17.38■□□□□ 0.37
CLN6Q9NWW5 AC020916.1-201ENST00000587762 1774 ntBASIC17.38■□□□□ 0.37
CLN6Q9NWW5 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC17.38■□□□□ 0.37
CLN6Q9NWW5 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
CLN6Q9NWW5 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC17.38■□□□□ 0.37
CLN6Q9NWW5 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
CLN6Q9NWW5 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CLN6Q9NWW5 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
CLN6Q9NWW5 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms