Protein–RNA interactions for Protein: Q9BYV2

TRIM54, Tripartite motif-containing protein 54, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54Q9BYV2 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
TRIM54Q9BYV2 AC141586.3-201ENST00000562166 1838 ntBASIC18.84■□□□□ 0.61
TRIM54Q9BYV2 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC18.83■□□□□ 0.61
TRIM54Q9BYV2 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
TRIM54Q9BYV2 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC18.83■□□□□ 0.61
TRIM54Q9BYV2 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
TRIM54Q9BYV2 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
TRIM54Q9BYV2 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC18.83■□□□□ 0.61
TRIM54Q9BYV2 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
TRIM54Q9BYV2 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC18.83■□□□□ 0.61
TRIM54Q9BYV2 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
TRIM54Q9BYV2 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
TRIM54Q9BYV2 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
TRIM54Q9BYV2 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC18.83■□□□□ 0.6
TRIM54Q9BYV2 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC18.83■□□□□ 0.6
TRIM54Q9BYV2 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
TRIM54Q9BYV2 SERF2-207ENST00000409614 582 ntTSL 2 BASIC18.83■□□□□ 0.6
TRIM54Q9BYV2 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
TRIM54Q9BYV2 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC18.83■□□□□ 0.6
TRIM54Q9BYV2 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC18.83■□□□□ 0.6
TRIM54Q9BYV2 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC18.83■□□□□ 0.6
TRIM54Q9BYV2 MIR4651-201ENST00000582622 73 ntBASIC18.83■□□□□ 0.6
TRIM54Q9BYV2 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.6
TRIM54Q9BYV2 CABP2-204ENST00000636477 941 ntTSL 5 BASIC18.83■□□□□ 0.6
TRIM54Q9BYV2 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
TRIM54Q9BYV2 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
TRIM54Q9BYV2 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC18.83■□□□□ 0.6
TRIM54Q9BYV2 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC18.83■□□□□ 0.6
TRIM54Q9BYV2 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
TRIM54Q9BYV2 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
TRIM54Q9BYV2 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
TRIM54Q9BYV2 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
TRIM54Q9BYV2 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC18.83■□□□□ 0.6
TRIM54Q9BYV2 SDHAP1-207ENST00000440850 2000 ntBASIC18.83■□□□□ 0.6
TRIM54Q9BYV2 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
TRIM54Q9BYV2 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TRIM54Q9BYV2 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
TRIM54Q9BYV2 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
TRIM54Q9BYV2 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TRIM54Q9BYV2 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC18.82■□□□□ 0.6
TRIM54Q9BYV2 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TRIM54Q9BYV2 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TRIM54Q9BYV2 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC18.82■□□□□ 0.6
TRIM54Q9BYV2 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
TRIM54Q9BYV2 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
TRIM54Q9BYV2 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC18.82■□□□□ 0.6
TRIM54Q9BYV2 DENND3-207ENST00000518347 850 ntTSL 2 BASIC18.82■□□□□ 0.6
TRIM54Q9BYV2 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC18.82■□□□□ 0.6
TRIM54Q9BYV2 C1QBPP2-201ENST00000528754 825 ntBASIC18.82■□□□□ 0.6
TRIM54Q9BYV2 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
TRIM54Q9BYV2 AL160286.2-201ENST00000567150 934 ntBASIC18.82■□□□□ 0.6
TRIM54Q9BYV2 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC18.82■□□□□ 0.6
TRIM54Q9BYV2 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC18.82■□□□□ 0.6
TRIM54Q9BYV2 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TRIM54Q9BYV2 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
TRIM54Q9BYV2 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
TRIM54Q9BYV2 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TRIM54Q9BYV2 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TRIM54Q9BYV2 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC18.82■□□□□ 0.6
TRIM54Q9BYV2 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TRIM54Q9BYV2 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC18.82■□□□□ 0.6
TRIM54Q9BYV2 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRIM54Q9BYV2 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRIM54Q9BYV2 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC18.81■□□□□ 0.6
TRIM54Q9BYV2 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRIM54Q9BYV2 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
TRIM54Q9BYV2 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
TRIM54Q9BYV2 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRIM54Q9BYV2 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRIM54Q9BYV2 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC18.81■□□□□ 0.6
TRIM54Q9BYV2 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC18.81■□□□□ 0.6
TRIM54Q9BYV2 TEX21P-204ENST00000641479 1693 ntBASIC18.81■□□□□ 0.6
TRIM54Q9BYV2 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRIM54Q9BYV2 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC18.81■□□□□ 0.6
TRIM54Q9BYV2 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
TRIM54Q9BYV2 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRIM54Q9BYV2 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC18.81■□□□□ 0.6
TRIM54Q9BYV2 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC18.81■□□□□ 0.6
TRIM54Q9BYV2 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC18.8■□□□□ 0.6
TRIM54Q9BYV2 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRIM54Q9BYV2 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRIM54Q9BYV2 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRIM54Q9BYV2 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC18.8■□□□□ 0.6
TRIM54Q9BYV2 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC18.8■□□□□ 0.6
TRIM54Q9BYV2 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
TRIM54Q9BYV2 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRIM54Q9BYV2 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
TRIM54Q9BYV2 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRIM54Q9BYV2 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
TRIM54Q9BYV2 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRIM54Q9BYV2 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC18.8■□□□□ 0.6
TRIM54Q9BYV2 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRIM54Q9BYV2 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC18.8■□□□□ 0.6
TRIM54Q9BYV2 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC18.8■□□□□ 0.6
TRIM54Q9BYV2 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC18.8■□□□□ 0.6
TRIM54Q9BYV2 MMD2-204ENST00000612910 778 ntTSL 5 BASIC18.8■□□□□ 0.6
TRIM54Q9BYV2 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRIM54Q9BYV2 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
TRIM54Q9BYV2 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRIM54Q9BYV2 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms