Protein–RNA interactions for Protein: Q8N8U3

RTL3, Retrotransposon Gag-like protein 3, humanhuman

Known RBP Predictions only

Length 475 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTL3Q8N8U3 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
RTL3Q8N8U3 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
RTL3Q8N8U3 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC19.58■□□□□ 0.73
RTL3Q8N8U3 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC19.58■□□□□ 0.73
RTL3Q8N8U3 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.73
RTL3Q8N8U3 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC19.58■□□□□ 0.73
RTL3Q8N8U3 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
RTL3Q8N8U3 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
RTL3Q8N8U3 CRYGFP-201ENST00000418459 633 ntBASIC19.58■□□□□ 0.72
RTL3Q8N8U3 FDX2-206ENST00000492239 773 ntTSL 2 BASIC19.58■□□□□ 0.72
RTL3Q8N8U3 AL161938.1-201ENST00000569833 2180 ntBASIC19.58■□□□□ 0.72
RTL3Q8N8U3 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.72
RTL3Q8N8U3 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC19.58■□□□□ 0.72
RTL3Q8N8U3 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
RTL3Q8N8U3 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC19.58■□□□□ 0.72
RTL3Q8N8U3 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
RTL3Q8N8U3 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC19.58■□□□□ 0.72
RTL3Q8N8U3 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.72
RTL3Q8N8U3 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC19.58■□□□□ 0.72
RTL3Q8N8U3 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC19.58■□□□□ 0.72
RTL3Q8N8U3 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC19.57■□□□□ 0.72
RTL3Q8N8U3 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC19.57■□□□□ 0.72
RTL3Q8N8U3 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC19.57■□□□□ 0.72
RTL3Q8N8U3 STX6-204ENST00000542060 4809 ntTSL 2 BASIC19.57■□□□□ 0.72
RTL3Q8N8U3 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC19.57■□□□□ 0.72
RTL3Q8N8U3 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
RTL3Q8N8U3 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC19.57■□□□□ 0.72
RTL3Q8N8U3 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC19.57■□□□□ 0.72
RTL3Q8N8U3 FITM1-202ENST00000559294 800 ntBASIC19.57■□□□□ 0.72
RTL3Q8N8U3 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
RTL3Q8N8U3 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
RTL3Q8N8U3 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
RTL3Q8N8U3 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
RTL3Q8N8U3 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC19.57■□□□□ 0.72
RTL3Q8N8U3 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC19.57■□□□□ 0.72
RTL3Q8N8U3 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
RTL3Q8N8U3 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
RTL3Q8N8U3 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
RTL3Q8N8U3 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
RTL3Q8N8U3 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
RTL3Q8N8U3 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
RTL3Q8N8U3 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
RTL3Q8N8U3 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
RTL3Q8N8U3 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
RTL3Q8N8U3 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC19.56■□□□□ 0.72
RTL3Q8N8U3 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
RTL3Q8N8U3 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC19.56■□□□□ 0.72
RTL3Q8N8U3 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
RTL3Q8N8U3 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC19.56■□□□□ 0.72
RTL3Q8N8U3 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
RTL3Q8N8U3 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC19.56■□□□□ 0.72
RTL3Q8N8U3 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
RTL3Q8N8U3 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
RTL3Q8N8U3 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC19.56■□□□□ 0.72
RTL3Q8N8U3 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC19.56■□□□□ 0.72
RTL3Q8N8U3 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
RTL3Q8N8U3 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
RTL3Q8N8U3 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
RTL3Q8N8U3 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC19.56■□□□□ 0.72
RTL3Q8N8U3 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
RTL3Q8N8U3 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC19.56■□□□□ 0.72
RTL3Q8N8U3 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
RTL3Q8N8U3 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
RTL3Q8N8U3 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
RTL3Q8N8U3 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
RTL3Q8N8U3 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
RTL3Q8N8U3 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
RTL3Q8N8U3 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC19.55■□□□□ 0.72
RTL3Q8N8U3 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
RTL3Q8N8U3 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC19.55■□□□□ 0.72
RTL3Q8N8U3 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
RTL3Q8N8U3 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
RTL3Q8N8U3 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
RTL3Q8N8U3 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
RTL3Q8N8U3 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
RTL3Q8N8U3 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
RTL3Q8N8U3 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
RTL3Q8N8U3 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC19.55■□□□□ 0.72
RTL3Q8N8U3 MIR1238-201ENST00000408483 83 ntBASIC19.55■□□□□ 0.72
RTL3Q8N8U3 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC19.55■□□□□ 0.72
RTL3Q8N8U3 AL390955.1-201ENST00000428694 934 ntBASIC19.55■□□□□ 0.72
RTL3Q8N8U3 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC19.55■□□□□ 0.72
RTL3Q8N8U3 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC19.55■□□□□ 0.72
RTL3Q8N8U3 CYGB-204ENST00000589342 815 ntTSL 3 BASIC19.55■□□□□ 0.72
RTL3Q8N8U3 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC19.55■□□□□ 0.72
RTL3Q8N8U3 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
RTL3Q8N8U3 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
RTL3Q8N8U3 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
RTL3Q8N8U3 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
RTL3Q8N8U3 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC19.54■□□□□ 0.72
RTL3Q8N8U3 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC19.54■□□□□ 0.72
RTL3Q8N8U3 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC19.54■□□□□ 0.72
RTL3Q8N8U3 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
RTL3Q8N8U3 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
RTL3Q8N8U3 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
RTL3Q8N8U3 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
RTL3Q8N8U3 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
RTL3Q8N8U3 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
RTL3Q8N8U3 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC19.54■□□□□ 0.72
RTL3Q8N8U3 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC19.54■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms