Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PPP4R4Q6NUP7 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PPP4R4Q6NUP7 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC18.28■□□□□ 0.52
PPP4R4Q6NUP7 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PPP4R4Q6NUP7 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PPP4R4Q6NUP7 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
PPP4R4Q6NUP7 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
PPP4R4Q6NUP7 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
PPP4R4Q6NUP7 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PPP4R4Q6NUP7 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC18.28■□□□□ 0.52
PPP4R4Q6NUP7 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PPP4R4Q6NUP7 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
PPP4R4Q6NUP7 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
PPP4R4Q6NUP7 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PPP4R4Q6NUP7 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
PPP4R4Q6NUP7 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC18.27■□□□□ 0.52
PPP4R4Q6NUP7 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
PPP4R4Q6NUP7 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PPP4R4Q6NUP7 AC087633.2-202ENST00000565166 1439 ntBASIC18.27■□□□□ 0.52
PPP4R4Q6NUP7 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
PPP4R4Q6NUP7 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PPP4R4Q6NUP7 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
PPP4R4Q6NUP7 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
PPP4R4Q6NUP7 AC091874.3-201ENST00000512672 1195 ntBASIC18.27■□□□□ 0.52
PPP4R4Q6NUP7 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC18.27■□□□□ 0.52
PPP4R4Q6NUP7 KRT18P6-201ENST00000555540 1265 ntBASIC18.27■□□□□ 0.52
PPP4R4Q6NUP7 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC18.27■□□□□ 0.52
PPP4R4Q6NUP7 AL356652.1-201ENST00000615962 565 ntBASIC18.27■□□□□ 0.52
PPP4R4Q6NUP7 AC105020.6-201ENST00000621523 1217 ntBASIC18.27■□□□□ 0.52
PPP4R4Q6NUP7 HR-201ENST00000312841 5351 ntTSL 5 BASIC18.27■□□□□ 0.52
PPP4R4Q6NUP7 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PPP4R4Q6NUP7 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PPP4R4Q6NUP7 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
PPP4R4Q6NUP7 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
PPP4R4Q6NUP7 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
PPP4R4Q6NUP7 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
PPP4R4Q6NUP7 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.51
PPP4R4Q6NUP7 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC18.27■□□□□ 0.51
PPP4R4Q6NUP7 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
PPP4R4Q6NUP7 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PPP4R4Q6NUP7 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PPP4R4Q6NUP7 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC18.26■□□□□ 0.51
PPP4R4Q6NUP7 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC18.26■□□□□ 0.51
PPP4R4Q6NUP7 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PPP4R4Q6NUP7 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PPP4R4Q6NUP7 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
PPP4R4Q6NUP7 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC18.26■□□□□ 0.51
PPP4R4Q6NUP7 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC18.26■□□□□ 0.51
PPP4R4Q6NUP7 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC18.26■□□□□ 0.51
PPP4R4Q6NUP7 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PPP4R4Q6NUP7 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
PPP4R4Q6NUP7 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PPP4R4Q6NUP7 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PPP4R4Q6NUP7 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC18.26■□□□□ 0.51
PPP4R4Q6NUP7 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
PPP4R4Q6NUP7 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC18.26■□□□□ 0.51
PPP4R4Q6NUP7 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC18.26■□□□□ 0.51
PPP4R4Q6NUP7 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC18.26■□□□□ 0.51
PPP4R4Q6NUP7 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC18.26■□□□□ 0.51
PPP4R4Q6NUP7 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
PPP4R4Q6NUP7 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC18.26■□□□□ 0.51
PPP4R4Q6NUP7 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC18.26■□□□□ 0.51
PPP4R4Q6NUP7 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
PPP4R4Q6NUP7 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
PPP4R4Q6NUP7 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC18.25■□□□□ 0.51
PPP4R4Q6NUP7 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
PPP4R4Q6NUP7 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
PPP4R4Q6NUP7 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PPP4R4Q6NUP7 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
PPP4R4Q6NUP7 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PPP4R4Q6NUP7 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PPP4R4Q6NUP7 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PPP4R4Q6NUP7 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PPP4R4Q6NUP7 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC18.25■□□□□ 0.51
PPP4R4Q6NUP7 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
PPP4R4Q6NUP7 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC18.25■□□□□ 0.51
PPP4R4Q6NUP7 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
PPP4R4Q6NUP7 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC18.25■□□□□ 0.51
PPP4R4Q6NUP7 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PPP4R4Q6NUP7 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
PPP4R4Q6NUP7 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC18.25■□□□□ 0.51
PPP4R4Q6NUP7 AC068880.1-201ENST00000507289 2297 ntBASIC18.25■□□□□ 0.51
PPP4R4Q6NUP7 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PPP4R4Q6NUP7 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PPP4R4Q6NUP7 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
PPP4R4Q6NUP7 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
PPP4R4Q6NUP7 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
PPP4R4Q6NUP7 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
PPP4R4Q6NUP7 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
PPP4R4Q6NUP7 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC18.25■□□□□ 0.51
PPP4R4Q6NUP7 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
PPP4R4Q6NUP7 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
PPP4R4Q6NUP7 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PPP4R4Q6NUP7 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC18.24■□□□□ 0.51
PPP4R4Q6NUP7 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PPP4R4Q6NUP7 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC18.24■□□□□ 0.51
PPP4R4Q6NUP7 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PPP4R4Q6NUP7 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PPP4R4Q6NUP7 MFF-205ENST00000354503 1085 ntTSL 2 BASIC18.24■□□□□ 0.51
PPP4R4Q6NUP7 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC18.24■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 41.4 ms