Protein–RNA interactions for Protein: P51790

CLCN3, H(+)/Cl(-) exchange transporter 3, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3P51790 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
CLCN3P51790 Telomerase-vert.1-201ENST00000363312 438 ntBASIC20.99■□□□□ 0.95
CLCN3P51790 TSPY5P-201ENST00000426936 936 ntBASIC20.99■□□□□ 0.95
CLCN3P51790 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
CLCN3P51790 AL441883.1-201ENST00000566170 1045 ntBASIC20.99■□□□□ 0.95
CLCN3P51790 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC20.99■□□□□ 0.95
CLCN3P51790 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
CLCN3P51790 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC20.99■□□□□ 0.95
CLCN3P51790 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
CLCN3P51790 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CLCN3P51790 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
CLCN3P51790 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CLCN3P51790 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CLCN3P51790 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CLCN3P51790 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CLCN3P51790 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC20.99■□□□□ 0.95
CLCN3P51790 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
CLCN3P51790 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CLCN3P51790 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC20.98■□□□□ 0.95
CLCN3P51790 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CLCN3P51790 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC20.98■□□□□ 0.95
CLCN3P51790 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC20.98■□□□□ 0.95
CLCN3P51790 NT5C-210ENST00000582160 860 ntTSL 2 BASIC20.98■□□□□ 0.95
CLCN3P51790 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CLCN3P51790 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
CLCN3P51790 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CLCN3P51790 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
CLCN3P51790 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CLCN3P51790 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CLCN3P51790 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
CLCN3P51790 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
CLCN3P51790 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC20.97■□□□□ 0.95
CLCN3P51790 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
CLCN3P51790 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CLCN3P51790 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CLCN3P51790 FAM8A6P-201ENST00000407496 1135 ntBASIC20.97■□□□□ 0.95
CLCN3P51790 PHB2-202ENST00000440277 996 ntTSL 5 BASIC20.97■□□□□ 0.95
CLCN3P51790 AC009947.2-201ENST00000444014 672 ntBASIC20.97■□□□□ 0.95
CLCN3P51790 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
CLCN3P51790 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC20.97■□□□□ 0.95
CLCN3P51790 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC20.97■□□□□ 0.95
CLCN3P51790 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC20.97■□□□□ 0.95
CLCN3P51790 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CLCN3P51790 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
CLCN3P51790 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
CLCN3P51790 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC20.97■□□□□ 0.95
CLCN3P51790 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
CLCN3P51790 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC20.97■□□□□ 0.95
CLCN3P51790 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CLCN3P51790 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CLCN3P51790 AC073130.3-201ENST00000624389 2278 ntBASIC20.97■□□□□ 0.95
CLCN3P51790 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC20.97■□□□□ 0.95
CLCN3P51790 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC20.96■□□□□ 0.95
CLCN3P51790 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CLCN3P51790 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CLCN3P51790 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
CLCN3P51790 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CLCN3P51790 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CLCN3P51790 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
CLCN3P51790 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC20.96■□□□□ 0.95
CLCN3P51790 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC20.96■□□□□ 0.95
CLCN3P51790 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CLCN3P51790 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC20.96■□□□□ 0.95
CLCN3P51790 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CLCN3P51790 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
CLCN3P51790 AC092647.4-201ENST00000457211 535 ntBASIC20.96■□□□□ 0.95
CLCN3P51790 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC20.96■□□□□ 0.95
CLCN3P51790 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC20.96■□□□□ 0.95
CLCN3P51790 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CLCN3P51790 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC20.96■□□□□ 0.95
CLCN3P51790 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CLCN3P51790 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
CLCN3P51790 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CLCN3P51790 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CLCN3P51790 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CLCN3P51790 TEX21P-204ENST00000641479 1693 ntBASIC20.96■□□□□ 0.95
CLCN3P51790 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CLCN3P51790 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.95
CLCN3P51790 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.95
CLCN3P51790 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.95
CLCN3P51790 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
CLCN3P51790 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CLCN3P51790 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
CLCN3P51790 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CLCN3P51790 COPE-203ENST00000351079 907 ntTSL 2 BASIC20.95■□□□□ 0.94
CLCN3P51790 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC20.95■□□□□ 0.94
CLCN3P51790 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC20.95■□□□□ 0.94
CLCN3P51790 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CLCN3P51790 LINC01238-205ENST00000567549 1107 ntBASIC20.95■□□□□ 0.94
CLCN3P51790 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC20.95■□□□□ 0.94
CLCN3P51790 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC20.95■□□□□ 0.94
CLCN3P51790 AC140113.3-201ENST00000605663 199 ntBASIC20.95■□□□□ 0.94
CLCN3P51790 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC20.95■□□□□ 0.94
CLCN3P51790 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
CLCN3P51790 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CLCN3P51790 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC20.95■□□□□ 0.94
CLCN3P51790 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CLCN3P51790 POLI-202ENST00000406285 2030 ntTSL 2 BASIC20.95■□□□□ 0.94
CLCN3P51790 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC20.95■□□□□ 0.94
CLCN3P51790 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms