Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC19.17■□□□□ 0.66
VIMP08670 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VIMP08670 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VIMP08670 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
VIMP08670 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC19.17■□□□□ 0.66
VIMP08670 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
VIMP08670 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
VIMP08670 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
VIMP08670 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
VIMP08670 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
VIMP08670 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
VIMP08670 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
VIMP08670 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
VIMP08670 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
VIMP08670 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
VIMP08670 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC19.16■□□□□ 0.66
VIMP08670 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC19.16■□□□□ 0.66
VIMP08670 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
VIMP08670 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC19.16■□□□□ 0.66
VIMP08670 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC19.16■□□□□ 0.66
VIMP08670 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
VIMP08670 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC19.16■□□□□ 0.66
VIMP08670 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
VIMP08670 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC19.16■□□□□ 0.66
VIMP08670 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
VIMP08670 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
VIMP08670 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
VIMP08670 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
VIMP08670 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC19.16■□□□□ 0.66
VIMP08670 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
VIMP08670 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
VIMP08670 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
VIMP08670 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC19.15■□□□□ 0.66
VIMP08670 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
VIMP08670 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC19.15■□□□□ 0.66
VIMP08670 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC19.15■□□□□ 0.66
VIMP08670 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
VIMP08670 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
VIMP08670 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
VIMP08670 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC19.15■□□□□ 0.66
VIMP08670 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC19.15■□□□□ 0.66
VIMP08670 ANO7L1-203ENST00000602586 1720 ntBASIC19.15■□□□□ 0.66
VIMP08670 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
VIMP08670 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC19.15■□□□□ 0.66
VIMP08670 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
VIMP08670 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
VIMP08670 NME4-202ENST00000382940 766 ntTSL 3 BASIC19.15■□□□□ 0.66
VIMP08670 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
VIMP08670 AF213884.3-201ENST00000563833 479 ntBASIC19.15■□□□□ 0.66
VIMP08670 NME4-211ENST00000620944 1193 ntTSL 2 BASIC19.15■□□□□ 0.66
VIMP08670 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC19.15■□□□□ 0.66
VIMP08670 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
VIMP08670 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
VIMP08670 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
VIMP08670 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
VIMP08670 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
VIMP08670 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC19.15■□□□□ 0.66
VIMP08670 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
VIMP08670 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
VIMP08670 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
VIMP08670 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
VIMP08670 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
VIMP08670 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
VIMP08670 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
VIMP08670 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC19.15■□□□□ 0.66
VIMP08670 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
VIMP08670 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
VIMP08670 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC19.14■□□□□ 0.66
VIMP08670 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
VIMP08670 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
VIMP08670 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
VIMP08670 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
VIMP08670 EML3-212ENST00000494176 2901 ntTSL 2 BASIC19.14■□□□□ 0.65
VIMP08670 EML3-216ENST00000529309 2909 ntTSL 2 BASIC19.14■□□□□ 0.65
VIMP08670 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
VIMP08670 MIR939-201ENST00000401314 82 ntBASIC19.14■□□□□ 0.65
VIMP08670 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC19.14■□□□□ 0.65
VIMP08670 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
VIMP08670 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
VIMP08670 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC19.14■□□□□ 0.65
VIMP08670 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
VIMP08670 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC19.14■□□□□ 0.65
VIMP08670 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
VIMP08670 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC19.14■□□□□ 0.65
VIMP08670 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC19.14■□□□□ 0.65
VIMP08670 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC19.14■□□□□ 0.65
VIMP08670 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
VIMP08670 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC19.14■□□□□ 0.65
VIMP08670 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC19.13■□□□□ 0.65
VIMP08670 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
VIMP08670 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC19.13■□□□□ 0.65
VIMP08670 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
VIMP08670 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
VIMP08670 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
VIMP08670 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
VIMP08670 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC19.13■□□□□ 0.65
VIMP08670 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
VIMP08670 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC19.13■□□□□ 0.65
VIMP08670 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC19.13■□□□□ 0.65
VIMP08670 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms