Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
PRKNO60260 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PRKNO60260 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC17.76■□□□□ 0.43
PRKNO60260 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
PRKNO60260 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PRKNO60260 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC17.76■□□□□ 0.43
PRKNO60260 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC17.76■□□□□ 0.43
PRKNO60260 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
PRKNO60260 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC17.76■□□□□ 0.43
PRKNO60260 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC17.76■□□□□ 0.43
PRKNO60260 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC17.76■□□□□ 0.43
PRKNO60260 LINC01023-201ENST00000606054 436 ntBASIC17.76■□□□□ 0.43
PRKNO60260 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC17.76■□□□□ 0.43
PRKNO60260 AC097493.4-201ENST00000641197 219 ntBASIC17.76■□□□□ 0.43
PRKNO60260 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC17.76■□□□□ 0.43
PRKNO60260 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PRKNO60260 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PRKNO60260 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PRKNO60260 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
PRKNO60260 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
PRKNO60260 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
PRKNO60260 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
PRKNO60260 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
PRKNO60260 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
PRKNO60260 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC17.75■□□□□ 0.43
PRKNO60260 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
PRKNO60260 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC17.75■□□□□ 0.43
PRKNO60260 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC17.75■□□□□ 0.43
PRKNO60260 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
PRKNO60260 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
PRKNO60260 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC17.75■□□□□ 0.43
PRKNO60260 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
PRKNO60260 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
PRKNO60260 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC17.75■□□□□ 0.43
PRKNO60260 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC17.75■□□□□ 0.43
PRKNO60260 NAPSB-206ENST00000562112 1266 ntBASIC17.75■□□□□ 0.43
PRKNO60260 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC17.75■□□□□ 0.43
PRKNO60260 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
PRKNO60260 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
PRKNO60260 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC17.75■□□□□ 0.43
PRKNO60260 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC17.75■□□□□ 0.43
PRKNO60260 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
PRKNO60260 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
PRKNO60260 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
PRKNO60260 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
PRKNO60260 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC17.74■□□□□ 0.43
PRKNO60260 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
PRKNO60260 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
PRKNO60260 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PRKNO60260 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PRKNO60260 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
PRKNO60260 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PRKNO60260 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
PRKNO60260 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PRKNO60260 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC17.74■□□□□ 0.43
PRKNO60260 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC17.74■□□□□ 0.43
PRKNO60260 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
PRKNO60260 INGX-201ENST00000359239 846 ntBASIC17.74■□□□□ 0.43
PRKNO60260 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC17.74■□□□□ 0.43
PRKNO60260 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PRKNO60260 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC17.74■□□□□ 0.43
PRKNO60260 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC17.74■□□□□ 0.43
PRKNO60260 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC17.74■□□□□ 0.43
PRKNO60260 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC17.74■□□□□ 0.43
PRKNO60260 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
PRKNO60260 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
PRKNO60260 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
PRKNO60260 AL049812.1-201ENST00000432563 2267 ntBASIC17.74■□□□□ 0.43
PRKNO60260 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
PRKNO60260 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
PRKNO60260 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC17.74■□□□□ 0.43
PRKNO60260 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC17.74■□□□□ 0.43
PRKNO60260 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PRKNO60260 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PRKNO60260 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC17.74■□□□□ 0.43
PRKNO60260 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC17.74■□□□□ 0.43
PRKNO60260 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PRKNO60260 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC17.74■□□□□ 0.43
PRKNO60260 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC17.74■□□□□ 0.43
PRKNO60260 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
PRKNO60260 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
PRKNO60260 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC17.73■□□□□ 0.43
PRKNO60260 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
PRKNO60260 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC17.73■□□□□ 0.43
PRKNO60260 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
PRKNO60260 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PRKNO60260 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
PRKNO60260 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC17.73■□□□□ 0.43
PRKNO60260 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
PRKNO60260 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
PRKNO60260 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC17.73■□□□□ 0.43
PRKNO60260 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC17.73■□□□□ 0.43
PRKNO60260 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
PRKNO60260 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC17.73■□□□□ 0.43
PRKNO60260 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC17.73■□□□□ 0.43
PRKNO60260 TSPY23P-201ENST00000440136 739 ntBASIC17.73■□□□□ 0.43
PRKNO60260 PTGES2-AS1-201ENST00000443493 2100 ntBASIC17.73■□□□□ 0.43
PRKNO60260 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
PRKNO60260 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC17.73■□□□□ 0.43
PRKNO60260 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms