Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.94
LIMA1Q9UHB6 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC20.89■□□□□ 0.94
LIMA1Q9UHB6 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC20.89■□□□□ 0.94
LIMA1Q9UHB6 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC20.89■□□□□ 0.94
LIMA1Q9UHB6 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
LIMA1Q9UHB6 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.94
LIMA1Q9UHB6 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
LIMA1Q9UHB6 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
LIMA1Q9UHB6 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
LIMA1Q9UHB6 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
LIMA1Q9UHB6 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
LIMA1Q9UHB6 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
LIMA1Q9UHB6 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.93
LIMA1Q9UHB6 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC20.89■□□□□ 0.93
LIMA1Q9UHB6 AC069152.1-201ENST00000438030 544 ntBASIC20.89■□□□□ 0.93
LIMA1Q9UHB6 TSPY23P-201ENST00000440136 739 ntBASIC20.89■□□□□ 0.93
LIMA1Q9UHB6 F2R-202ENST00000505600 442 ntTSL 2 BASIC20.89■□□□□ 0.93
LIMA1Q9UHB6 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
LIMA1Q9UHB6 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC20.89■□□□□ 0.93
LIMA1Q9UHB6 GXYLT1P5-201ENST00000614548 1189 ntBASIC20.89■□□□□ 0.93
LIMA1Q9UHB6 HLA-A-209ENST00000638375 975 ntBASIC20.89■□□□□ 0.93
LIMA1Q9UHB6 AC133041.1-202ENST00000642053 222 ntBASIC20.89■□□□□ 0.93
LIMA1Q9UHB6 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
LIMA1Q9UHB6 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
LIMA1Q9UHB6 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC20.89■□□□□ 0.93
LIMA1Q9UHB6 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC20.89■□□□□ 0.93
LIMA1Q9UHB6 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
LIMA1Q9UHB6 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
LIMA1Q9UHB6 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
LIMA1Q9UHB6 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
LIMA1Q9UHB6 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC20.89■□□□□ 0.93
LIMA1Q9UHB6 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
LIMA1Q9UHB6 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
LIMA1Q9UHB6 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
LIMA1Q9UHB6 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
LIMA1Q9UHB6 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
LIMA1Q9UHB6 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
LIMA1Q9UHB6 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
LIMA1Q9UHB6 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
LIMA1Q9UHB6 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC20.88■□□□□ 0.93
LIMA1Q9UHB6 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
LIMA1Q9UHB6 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC20.88■□□□□ 0.93
LIMA1Q9UHB6 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC20.88■□□□□ 0.93
LIMA1Q9UHB6 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
LIMA1Q9UHB6 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC20.88■□□□□ 0.93
LIMA1Q9UHB6 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
LIMA1Q9UHB6 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
LIMA1Q9UHB6 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
LIMA1Q9UHB6 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
LIMA1Q9UHB6 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
LIMA1Q9UHB6 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC20.88■□□□□ 0.93
LIMA1Q9UHB6 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC20.88■□□□□ 0.93
LIMA1Q9UHB6 AL160286.2-201ENST00000567150 934 ntBASIC20.88■□□□□ 0.93
LIMA1Q9UHB6 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
LIMA1Q9UHB6 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC20.88■□□□□ 0.93
LIMA1Q9UHB6 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
LIMA1Q9UHB6 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
LIMA1Q9UHB6 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC20.88■□□□□ 0.93
LIMA1Q9UHB6 AL354751.1-201ENST00000412768 1863 ntBASIC20.88■□□□□ 0.93
LIMA1Q9UHB6 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
LIMA1Q9UHB6 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC20.87■□□□□ 0.93
LIMA1Q9UHB6 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC20.87■□□□□ 0.93
LIMA1Q9UHB6 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC20.87■□□□□ 0.93
LIMA1Q9UHB6 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
LIMA1Q9UHB6 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC20.87■□□□□ 0.93
LIMA1Q9UHB6 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
LIMA1Q9UHB6 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
LIMA1Q9UHB6 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC20.87■□□□□ 0.93
LIMA1Q9UHB6 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC20.87■□□□□ 0.93
LIMA1Q9UHB6 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
LIMA1Q9UHB6 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
LIMA1Q9UHB6 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
LIMA1Q9UHB6 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
LIMA1Q9UHB6 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC20.87■□□□□ 0.93
LIMA1Q9UHB6 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
LIMA1Q9UHB6 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
LIMA1Q9UHB6 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
LIMA1Q9UHB6 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC20.87■□□□□ 0.93
LIMA1Q9UHB6 COBL-210ENST00000632460 1941 ntTSL 5 BASIC20.87■□□□□ 0.93
LIMA1Q9UHB6 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
LIMA1Q9UHB6 POM121L13P-201ENST00000422362 380 ntBASIC20.87■□□□□ 0.93
LIMA1Q9UHB6 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
LIMA1Q9UHB6 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
LIMA1Q9UHB6 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
LIMA1Q9UHB6 THEM4-205ENST00000489410 643 ntTSL 2 BASIC20.87■□□□□ 0.93
LIMA1Q9UHB6 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC20.87■□□□□ 0.93
LIMA1Q9UHB6 C1QL1P1-201ENST00000568105 661 ntBASIC20.87■□□□□ 0.93
LIMA1Q9UHB6 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
LIMA1Q9UHB6 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
LIMA1Q9UHB6 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
LIMA1Q9UHB6 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC20.87■□□□□ 0.93
LIMA1Q9UHB6 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC20.87■□□□□ 0.93
LIMA1Q9UHB6 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
LIMA1Q9UHB6 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC20.87■□□□□ 0.93
LIMA1Q9UHB6 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
LIMA1Q9UHB6 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
LIMA1Q9UHB6 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
LIMA1Q9UHB6 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
LIMA1Q9UHB6 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
LIMA1Q9UHB6 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms