Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 AC011767.1-201ENST00000617410 1153 ntBASIC16.84■□□□□ 0.29
MMP28Q9H239 AC073111.5-205ENST00000641717 521 ntBASIC16.84■□□□□ 0.29
MMP28Q9H239 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
MMP28Q9H239 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
MMP28Q9H239 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
MMP28Q9H239 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC16.84■□□□□ 0.29
MMP28Q9H239 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC16.84■□□□□ 0.29
MMP28Q9H239 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
MMP28Q9H239 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
MMP28Q9H239 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC16.84■□□□□ 0.29
MMP28Q9H239 AC116050.2-201ENST00000612102 1779 ntBASIC16.84■□□□□ 0.29
MMP28Q9H239 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
MMP28Q9H239 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
MMP28Q9H239 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC16.84■□□□□ 0.29
MMP28Q9H239 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
MMP28Q9H239 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
MMP28Q9H239 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
MMP28Q9H239 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
MMP28Q9H239 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
MMP28Q9H239 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
MMP28Q9H239 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.29
MMP28Q9H239 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.29
MMP28Q9H239 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
MMP28Q9H239 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
MMP28Q9H239 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
MMP28Q9H239 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
MMP28Q9H239 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
MMP28Q9H239 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
MMP28Q9H239 BMP1-204ENST00000397814 836 ntTSL 4 BASIC16.83■□□□□ 0.28
MMP28Q9H239 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC16.83■□□□□ 0.28
MMP28Q9H239 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
MMP28Q9H239 AC091799.1-201ENST00000422823 811 ntBASIC16.83■□□□□ 0.28
MMP28Q9H239 CDCA4P2-201ENST00000441182 718 ntBASIC16.83■□□□□ 0.28
MMP28Q9H239 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC16.83■□□□□ 0.28
MMP28Q9H239 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC16.83■□□□□ 0.28
MMP28Q9H239 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
MMP28Q9H239 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
MMP28Q9H239 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC16.83■□□□□ 0.28
MMP28Q9H239 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC16.83■□□□□ 0.28
MMP28Q9H239 GXYLT1P5-201ENST00000614548 1189 ntBASIC16.83■□□□□ 0.28
MMP28Q9H239 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
MMP28Q9H239 AC013268.1-206ENST00000638368 961 ntBASIC16.83■□□□□ 0.28
MMP28Q9H239 AC112229.1-201ENST00000639295 961 ntBASIC16.83■□□□□ 0.28
MMP28Q9H239 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC16.83■□□□□ 0.28
MMP28Q9H239 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
MMP28Q9H239 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
MMP28Q9H239 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC16.83■□□□□ 0.28
MMP28Q9H239 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
MMP28Q9H239 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
MMP28Q9H239 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
MMP28Q9H239 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
MMP28Q9H239 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
MMP28Q9H239 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
MMP28Q9H239 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC16.82■□□□□ 0.28
MMP28Q9H239 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
MMP28Q9H239 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
MMP28Q9H239 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
MMP28Q9H239 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
MMP28Q9H239 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
MMP28Q9H239 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
MMP28Q9H239 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC16.82■□□□□ 0.28
MMP28Q9H239 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC16.82■□□□□ 0.28
MMP28Q9H239 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC16.82■□□□□ 0.28
MMP28Q9H239 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC16.82■□□□□ 0.28
MMP28Q9H239 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
MMP28Q9H239 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
MMP28Q9H239 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
MMP28Q9H239 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
MMP28Q9H239 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
MMP28Q9H239 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
MMP28Q9H239 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC16.82■□□□□ 0.28
MMP28Q9H239 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC16.82■□□□□ 0.28
MMP28Q9H239 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC16.82■□□□□ 0.28
MMP28Q9H239 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
MMP28Q9H239 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
MMP28Q9H239 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC16.82■□□□□ 0.28
MMP28Q9H239 HTR7P1-202ENST00000624664 4411 ntBASIC16.82■□□□□ 0.28
MMP28Q9H239 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
MMP28Q9H239 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
MMP28Q9H239 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC16.81■□□□□ 0.28
MMP28Q9H239 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
MMP28Q9H239 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
MMP28Q9H239 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC16.81■□□□□ 0.28
MMP28Q9H239 MKRN4P-201ENST00000444706 1521 ntBASIC16.81■□□□□ 0.28
MMP28Q9H239 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
MMP28Q9H239 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
MMP28Q9H239 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
MMP28Q9H239 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
MMP28Q9H239 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
MMP28Q9H239 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
MMP28Q9H239 FP475955.4-201ENST00000623131 1990 ntBASIC16.81■□□□□ 0.28
MMP28Q9H239 PCDHA12-202ENST00000613593 2588 ntBASIC16.81■□□□□ 0.28
MMP28Q9H239 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC16.81■□□□□ 0.28
MMP28Q9H239 CDV3P1-201ENST00000471403 739 ntBASIC16.81■□□□□ 0.28
MMP28Q9H239 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
MMP28Q9H239 AC007322.4-201ENST00000509611 723 ntBASIC16.81■□□□□ 0.28
MMP28Q9H239 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC16.81■□□□□ 0.28
MMP28Q9H239 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC16.81■□□□□ 0.28
MMP28Q9H239 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC16.81■□□□□ 0.28
MMP28Q9H239 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC16.81■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms