Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
LINC00477Q96M19 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
LINC00477Q96M19 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
LINC00477Q96M19 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
LINC00477Q96M19 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC14.33□□□□□ -0.12
LINC00477Q96M19 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.12
LINC00477Q96M19 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
LINC00477Q96M19 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC14.33□□□□□ -0.12
LINC00477Q96M19 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
LINC00477Q96M19 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC14.33□□□□□ -0.12
LINC00477Q96M19 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC14.32□□□□□ -0.12
LINC00477Q96M19 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC14.32□□□□□ -0.12
LINC00477Q96M19 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC14.32□□□□□ -0.12
LINC00477Q96M19 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
LINC00477Q96M19 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
LINC00477Q96M19 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC14.32□□□□□ -0.12
LINC00477Q96M19 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
LINC00477Q96M19 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
LINC00477Q96M19 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
LINC00477Q96M19 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
LINC00477Q96M19 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
LINC00477Q96M19 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
LINC00477Q96M19 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
LINC00477Q96M19 UBQLN4P1-201ENST00000461599 1801 ntBASIC14.32□□□□□ -0.12
LINC00477Q96M19 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC14.32□□□□□ -0.12
LINC00477Q96M19 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
LINC00477Q96M19 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
LINC00477Q96M19 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
LINC00477Q96M19 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC14.32□□□□□ -0.12
LINC00477Q96M19 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
LINC00477Q96M19 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC14.32□□□□□ -0.12
LINC00477Q96M19 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
LINC00477Q96M19 GUSBP6-202ENST00000438529 1198 ntBASIC14.32□□□□□ -0.12
LINC00477Q96M19 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC14.32□□□□□ -0.12
LINC00477Q96M19 SLC29A4P2-201ENST00000504749 1089 ntBASIC14.32□□□□□ -0.12
LINC00477Q96M19 TK2-208ENST00000545043 1120 ntTSL 2 BASIC14.32□□□□□ -0.12
LINC00477Q96M19 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC14.32□□□□□ -0.12
LINC00477Q96M19 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
LINC00477Q96M19 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC14.32□□□□□ -0.12
LINC00477Q96M19 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC14.32□□□□□ -0.12
LINC00477Q96M19 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
LINC00477Q96M19 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
LINC00477Q96M19 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
LINC00477Q96M19 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
LINC00477Q96M19 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC14.32□□□□□ -0.12
LINC00477Q96M19 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
LINC00477Q96M19 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
LINC00477Q96M19 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
LINC00477Q96M19 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC14.32□□□□□ -0.12
LINC00477Q96M19 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
LINC00477Q96M19 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC14.32□□□□□ -0.12
LINC00477Q96M19 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
LINC00477Q96M19 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC14.32□□□□□ -0.12
LINC00477Q96M19 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
LINC00477Q96M19 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC14.32□□□□□ -0.12
LINC00477Q96M19 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
LINC00477Q96M19 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
LINC00477Q96M19 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC14.32□□□□□ -0.12
LINC00477Q96M19 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
LINC00477Q96M19 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
LINC00477Q96M19 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC14.31□□□□□ -0.12
LINC00477Q96M19 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
LINC00477Q96M19 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
LINC00477Q96M19 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC14.31□□□□□ -0.12
LINC00477Q96M19 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
LINC00477Q96M19 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
LINC00477Q96M19 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
LINC00477Q96M19 AC093525.10-201ENST00000625130 1569 ntBASIC14.31□□□□□ -0.12
LINC00477Q96M19 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
LINC00477Q96M19 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC14.31□□□□□ -0.12
LINC00477Q96M19 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC14.31□□□□□ -0.12
LINC00477Q96M19 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC14.31□□□□□ -0.12
LINC00477Q96M19 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
LINC00477Q96M19 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC14.31□□□□□ -0.12
LINC00477Q96M19 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
LINC00477Q96M19 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
LINC00477Q96M19 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
LINC00477Q96M19 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
LINC00477Q96M19 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC14.31□□□□□ -0.12
LINC00477Q96M19 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC14.31□□□□□ -0.12
LINC00477Q96M19 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
LINC00477Q96M19 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
LINC00477Q96M19 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC14.31□□□□□ -0.12
LINC00477Q96M19 AC008687.6-201ENST00000596318 630 ntBASIC14.31□□□□□ -0.12
LINC00477Q96M19 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
LINC00477Q96M19 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
LINC00477Q96M19 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
LINC00477Q96M19 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
LINC00477Q96M19 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC14.31□□□□□ -0.12
LINC00477Q96M19 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC14.31□□□□□ -0.12
LINC00477Q96M19 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
LINC00477Q96M19 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
LINC00477Q96M19 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
LINC00477Q96M19 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
LINC00477Q96M19 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC14.31□□□□□ -0.12
LINC00477Q96M19 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
LINC00477Q96M19 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
LINC00477Q96M19 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
LINC00477Q96M19 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC14.3□□□□□ -0.12
LINC00477Q96M19 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC14.3□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms