Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
HPS3Q969F9 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC21.18■□□□□ 0.98
HPS3Q969F9 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
HPS3Q969F9 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC21.18■□□□□ 0.98
HPS3Q969F9 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
HPS3Q969F9 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC21.18■□□□□ 0.98
HPS3Q969F9 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC21.18■□□□□ 0.98
HPS3Q969F9 RPS15-203ENST00000586096 570 ntTSL 2 BASIC21.18■□□□□ 0.98
HPS3Q969F9 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC21.18■□□□□ 0.98
HPS3Q969F9 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
HPS3Q969F9 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC21.18■□□□□ 0.98
HPS3Q969F9 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
HPS3Q969F9 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC21.18■□□□□ 0.98
HPS3Q969F9 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC21.18■□□□□ 0.98
HPS3Q969F9 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
HPS3Q969F9 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
HPS3Q969F9 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
HPS3Q969F9 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC21.17■□□□□ 0.98
HPS3Q969F9 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
HPS3Q969F9 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
HPS3Q969F9 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
HPS3Q969F9 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
HPS3Q969F9 FAM197Y1-201ENST00000421178 764 ntBASIC21.17■□□□□ 0.98
HPS3Q969F9 SAPCD2P4-201ENST00000424595 1171 ntBASIC21.17■□□□□ 0.98
HPS3Q969F9 PPP1R14BP5-201ENST00000440334 435 ntBASIC21.17■□□□□ 0.98
HPS3Q969F9 KSR1P1-201ENST00000446298 240 ntBASIC21.17■□□□□ 0.98
HPS3Q969F9 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
HPS3Q969F9 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC21.17■□□□□ 0.98
HPS3Q969F9 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
HPS3Q969F9 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
HPS3Q969F9 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
HPS3Q969F9 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC21.17■□□□□ 0.98
HPS3Q969F9 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
HPS3Q969F9 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
HPS3Q969F9 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
HPS3Q969F9 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
HPS3Q969F9 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
HPS3Q969F9 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
HPS3Q969F9 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
HPS3Q969F9 CROCCP3-202ENST00000420820 1947 ntBASIC21.16■□□□□ 0.98
HPS3Q969F9 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
HPS3Q969F9 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC21.16■□□□□ 0.98
HPS3Q969F9 FEM1AP3-201ENST00000403722 1741 ntBASIC21.16■□□□□ 0.98
HPS3Q969F9 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC21.16■□□□□ 0.98
HPS3Q969F9 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
HPS3Q969F9 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC21.16■□□□□ 0.98
HPS3Q969F9 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
HPS3Q969F9 GAS2L1P1-201ENST00000420145 1480 ntBASIC21.16■□□□□ 0.98
HPS3Q969F9 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC21.16■□□□□ 0.98
HPS3Q969F9 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
HPS3Q969F9 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
HPS3Q969F9 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
HPS3Q969F9 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC21.16■□□□□ 0.98
HPS3Q969F9 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC21.16■□□□□ 0.98
HPS3Q969F9 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC21.16■□□□□ 0.98
HPS3Q969F9 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC21.16■□□□□ 0.98
HPS3Q969F9 AC131212.4-201ENST00000623606 975 ntBASIC21.16■□□□□ 0.98
HPS3Q969F9 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
HPS3Q969F9 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
HPS3Q969F9 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
HPS3Q969F9 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
HPS3Q969F9 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
HPS3Q969F9 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
HPS3Q969F9 KRT16P1-201ENST00000399124 1418 ntBASIC21.15■□□□□ 0.98
HPS3Q969F9 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
HPS3Q969F9 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
HPS3Q969F9 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
HPS3Q969F9 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
HPS3Q969F9 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
HPS3Q969F9 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
HPS3Q969F9 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
HPS3Q969F9 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
HPS3Q969F9 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC21.15■□□□□ 0.98
HPS3Q969F9 TMEM191A-211ENST00000637163 1067 ntBASIC21.15■□□□□ 0.98
HPS3Q969F9 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
HPS3Q969F9 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
HPS3Q969F9 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
HPS3Q969F9 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
HPS3Q969F9 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
HPS3Q969F9 USP39-202ENST00000409025 1946 ntTSL 5 BASIC21.15■□□□□ 0.98
HPS3Q969F9 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
HPS3Q969F9 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
HPS3Q969F9 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
HPS3Q969F9 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
HPS3Q969F9 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
HPS3Q969F9 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
HPS3Q969F9 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
HPS3Q969F9 RCC2P6-201ENST00000526625 1557 ntBASIC21.14■□□□□ 0.98
HPS3Q969F9 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
HPS3Q969F9 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC21.14■□□□□ 0.98
HPS3Q969F9 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC21.14■□□□□ 0.98
HPS3Q969F9 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
HPS3Q969F9 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
HPS3Q969F9 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC21.14■□□□□ 0.98
HPS3Q969F9 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC21.14■□□□□ 0.98
HPS3Q969F9 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
HPS3Q969F9 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC21.14■□□□□ 0.97
HPS3Q969F9 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
HPS3Q969F9 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
HPS3Q969F9 PTPA-216ENST00000432651 857 ntTSL 2 BASIC21.14■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 17.5 ms