Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC18.62■□□□□ 0.57
LMX1AQ8TE12 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC18.62■□□□□ 0.57
LMX1AQ8TE12 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
LMX1AQ8TE12 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LMX1AQ8TE12 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
LMX1AQ8TE12 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
LMX1AQ8TE12 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
LMX1AQ8TE12 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
LMX1AQ8TE12 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LMX1AQ8TE12 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
LMX1AQ8TE12 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
LMX1AQ8TE12 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LMX1AQ8TE12 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC18.62■□□□□ 0.57
LMX1AQ8TE12 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC18.62■□□□□ 0.57
LMX1AQ8TE12 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
LMX1AQ8TE12 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
LMX1AQ8TE12 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC18.61■□□□□ 0.57
LMX1AQ8TE12 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
LMX1AQ8TE12 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
LMX1AQ8TE12 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LMX1AQ8TE12 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC18.61■□□□□ 0.57
LMX1AQ8TE12 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC18.61■□□□□ 0.57
LMX1AQ8TE12 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LMX1AQ8TE12 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC18.61■□□□□ 0.57
LMX1AQ8TE12 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LMX1AQ8TE12 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
LMX1AQ8TE12 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
LMX1AQ8TE12 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LMX1AQ8TE12 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LMX1AQ8TE12 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LMX1AQ8TE12 PCED1CP-201ENST00000419887 785 ntBASIC18.61■□□□□ 0.57
LMX1AQ8TE12 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LMX1AQ8TE12 KRT18P38-201ENST00000449496 1282 ntBASIC18.61■□□□□ 0.57
LMX1AQ8TE12 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC18.61■□□□□ 0.57
LMX1AQ8TE12 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC18.61■□□□□ 0.57
LMX1AQ8TE12 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC18.61■□□□□ 0.57
LMX1AQ8TE12 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC18.61■□□□□ 0.57
LMX1AQ8TE12 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC18.61■□□□□ 0.57
LMX1AQ8TE12 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC18.61■□□□□ 0.57
LMX1AQ8TE12 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC18.61■□□□□ 0.57
LMX1AQ8TE12 AL121956.5-201ENST00000625261 221 ntBASIC18.61■□□□□ 0.57
LMX1AQ8TE12 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LMX1AQ8TE12 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
LMX1AQ8TE12 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
LMX1AQ8TE12 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC18.61■□□□□ 0.57
LMX1AQ8TE12 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
LMX1AQ8TE12 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LMX1AQ8TE12 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC18.6■□□□□ 0.57
LMX1AQ8TE12 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC18.6■□□□□ 0.57
LMX1AQ8TE12 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC18.6■□□□□ 0.57
LMX1AQ8TE12 SNX5-210ENST00000481323 562 ntTSL 3 BASIC18.6■□□□□ 0.57
LMX1AQ8TE12 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
LMX1AQ8TE12 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
LMX1AQ8TE12 NEK4P2-201ENST00000580004 1012 ntBASIC18.6■□□□□ 0.57
LMX1AQ8TE12 USF2-205ENST00000594064 1179 ntTSL 2 BASIC18.6■□□□□ 0.57
LMX1AQ8TE12 AC008622.2-201ENST00000617006 1229 ntBASIC18.6■□□□□ 0.57
LMX1AQ8TE12 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC18.6■□□□□ 0.57
LMX1AQ8TE12 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
LMX1AQ8TE12 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
LMX1AQ8TE12 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC18.6■□□□□ 0.57
LMX1AQ8TE12 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC18.6■□□□□ 0.57
LMX1AQ8TE12 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC18.6■□□□□ 0.57
LMX1AQ8TE12 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
LMX1AQ8TE12 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LMX1AQ8TE12 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LMX1AQ8TE12 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
LMX1AQ8TE12 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
LMX1AQ8TE12 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LMX1AQ8TE12 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LMX1AQ8TE12 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC18.59■□□□□ 0.57
LMX1AQ8TE12 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LMX1AQ8TE12 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC18.59■□□□□ 0.57
LMX1AQ8TE12 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LMX1AQ8TE12 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC18.59■□□□□ 0.57
LMX1AQ8TE12 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC18.59■□□□□ 0.57
LMX1AQ8TE12 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
LMX1AQ8TE12 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
LMX1AQ8TE12 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC18.59■□□□□ 0.57
LMX1AQ8TE12 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
LMX1AQ8TE12 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LMX1AQ8TE12 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
LMX1AQ8TE12 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC18.59■□□□□ 0.57
LMX1AQ8TE12 FAM86EP-206ENST00000510506 987 ntBASIC18.59■□□□□ 0.57
LMX1AQ8TE12 NMU-205ENST00000511469 756 ntTSL 3 BASIC18.59■□□□□ 0.57
LMX1AQ8TE12 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC18.59■□□□□ 0.57
LMX1AQ8TE12 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
LMX1AQ8TE12 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC18.59■□□□□ 0.57
LMX1AQ8TE12 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC18.59■□□□□ 0.57
LMX1AQ8TE12 GCSHP2-201ENST00000560971 527 ntBASIC18.59■□□□□ 0.57
LMX1AQ8TE12 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC18.59■□□□□ 0.57
LMX1AQ8TE12 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
LMX1AQ8TE12 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC18.59■□□□□ 0.57
LMX1AQ8TE12 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC18.59■□□□□ 0.57
LMX1AQ8TE12 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC18.59■□□□□ 0.57
LMX1AQ8TE12 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LMX1AQ8TE12 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC18.59■□□□□ 0.57
LMX1AQ8TE12 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
LMX1AQ8TE12 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
LMX1AQ8TE12 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC18.59■□□□□ 0.57
LMX1AQ8TE12 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms