Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 AL512625.2-201ENST00000417533 625 ntBASIC17.69■□□□□ 0.42
ZNF540Q8NDQ6 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC17.69■□□□□ 0.42
ZNF540Q8NDQ6 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC17.69■□□□□ 0.42
ZNF540Q8NDQ6 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
ZNF540Q8NDQ6 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
ZNF540Q8NDQ6 AL031963.3-201ENST00000606441 850 ntBASIC17.69■□□□□ 0.42
ZNF540Q8NDQ6 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
ZNF540Q8NDQ6 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC17.69■□□□□ 0.42
ZNF540Q8NDQ6 KRT8P20-201ENST00000423953 1409 ntBASIC17.69■□□□□ 0.42
ZNF540Q8NDQ6 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
ZNF540Q8NDQ6 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
ZNF540Q8NDQ6 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
ZNF540Q8NDQ6 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC17.69■□□□□ 0.42
ZNF540Q8NDQ6 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC17.69■□□□□ 0.42
ZNF540Q8NDQ6 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
ZNF540Q8NDQ6 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
ZNF540Q8NDQ6 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC17.69■□□□□ 0.42
ZNF540Q8NDQ6 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
ZNF540Q8NDQ6 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC17.69■□□□□ 0.42
ZNF540Q8NDQ6 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
ZNF540Q8NDQ6 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC17.69■□□□□ 0.42
ZNF540Q8NDQ6 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
ZNF540Q8NDQ6 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC17.68■□□□□ 0.42
ZNF540Q8NDQ6 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
ZNF540Q8NDQ6 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
ZNF540Q8NDQ6 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
ZNF540Q8NDQ6 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
ZNF540Q8NDQ6 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
ZNF540Q8NDQ6 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
ZNF540Q8NDQ6 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
ZNF540Q8NDQ6 TEX21P-204ENST00000641479 1693 ntBASIC17.68■□□□□ 0.42
ZNF540Q8NDQ6 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
ZNF540Q8NDQ6 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
ZNF540Q8NDQ6 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC17.68■□□□□ 0.42
ZNF540Q8NDQ6 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
ZNF540Q8NDQ6 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
ZNF540Q8NDQ6 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC17.68■□□□□ 0.42
ZNF540Q8NDQ6 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC17.68■□□□□ 0.42
ZNF540Q8NDQ6 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
ZNF540Q8NDQ6 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
ZNF540Q8NDQ6 AC068338.2-201ENST00000563278 1430 ntBASIC17.68■□□□□ 0.42
ZNF540Q8NDQ6 AL162412.1-201ENST00000567129 965 ntBASIC17.68■□□□□ 0.42
ZNF540Q8NDQ6 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC17.68■□□□□ 0.42
ZNF540Q8NDQ6 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
ZNF540Q8NDQ6 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
ZNF540Q8NDQ6 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
ZNF540Q8NDQ6 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
ZNF540Q8NDQ6 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
ZNF540Q8NDQ6 AC068880.1-201ENST00000507289 2297 ntBASIC17.68■□□□□ 0.42
ZNF540Q8NDQ6 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC17.68■□□□□ 0.42
ZNF540Q8NDQ6 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC17.68■□□□□ 0.42
ZNF540Q8NDQ6 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
ZNF540Q8NDQ6 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
ZNF540Q8NDQ6 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
ZNF540Q8NDQ6 MKRN4P-201ENST00000444706 1521 ntBASIC17.67■□□□□ 0.42
ZNF540Q8NDQ6 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
ZNF540Q8NDQ6 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
ZNF540Q8NDQ6 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
ZNF540Q8NDQ6 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC17.67■□□□□ 0.42
ZNF540Q8NDQ6 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC17.67■□□□□ 0.42
ZNF540Q8NDQ6 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
ZNF540Q8NDQ6 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
ZNF540Q8NDQ6 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC17.67■□□□□ 0.42
ZNF540Q8NDQ6 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
ZNF540Q8NDQ6 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC17.67■□□□□ 0.42
ZNF540Q8NDQ6 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC17.67■□□□□ 0.42
ZNF540Q8NDQ6 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
ZNF540Q8NDQ6 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
ZNF540Q8NDQ6 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
ZNF540Q8NDQ6 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC17.67■□□□□ 0.42
ZNF540Q8NDQ6 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
ZNF540Q8NDQ6 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
ZNF540Q8NDQ6 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
ZNF540Q8NDQ6 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
ZNF540Q8NDQ6 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
ZNF540Q8NDQ6 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
ZNF540Q8NDQ6 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
ZNF540Q8NDQ6 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
ZNF540Q8NDQ6 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
ZNF540Q8NDQ6 EFTUD1P1-204ENST00000560401 1798 ntBASIC17.66■□□□□ 0.42
ZNF540Q8NDQ6 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC17.66■□□□□ 0.42
ZNF540Q8NDQ6 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC17.66■□□□□ 0.42
ZNF540Q8NDQ6 PHGDH-210ENST00000641115 1638 ntBASIC17.66■□□□□ 0.42
ZNF540Q8NDQ6 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
ZNF540Q8NDQ6 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC17.66■□□□□ 0.42
ZNF540Q8NDQ6 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC17.66■□□□□ 0.42
ZNF540Q8NDQ6 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC17.66■□□□□ 0.42
ZNF540Q8NDQ6 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
ZNF540Q8NDQ6 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
ZNF540Q8NDQ6 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
ZNF540Q8NDQ6 CYP2T1P-201ENST00000432607 1285 ntBASIC17.66■□□□□ 0.42
ZNF540Q8NDQ6 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC17.66■□□□□ 0.42
ZNF540Q8NDQ6 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
ZNF540Q8NDQ6 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC17.66■□□□□ 0.42
ZNF540Q8NDQ6 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
ZNF540Q8NDQ6 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
ZNF540Q8NDQ6 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC17.66■□□□□ 0.42
ZNF540Q8NDQ6 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
ZNF540Q8NDQ6 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC17.66■□□□□ 0.42
ZNF540Q8NDQ6 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms