Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC15.26■□□□□ 0.03
CLRN3Q8NCR9 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC15.26■□□□□ 0.03
CLRN3Q8NCR9 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
CLRN3Q8NCR9 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CLRN3Q8NCR9 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CLRN3Q8NCR9 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
CLRN3Q8NCR9 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CLRN3Q8NCR9 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CLRN3Q8NCR9 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC15.26■□□□□ 0.03
CLRN3Q8NCR9 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC15.26■□□□□ 0.03
CLRN3Q8NCR9 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CLRN3Q8NCR9 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC15.26■□□□□ 0.03
CLRN3Q8NCR9 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC15.26■□□□□ 0.03
CLRN3Q8NCR9 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CLRN3Q8NCR9 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
CLRN3Q8NCR9 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
CLRN3Q8NCR9 TK2-202ENST00000417693 1046 ntTSL 2 BASIC15.26■□□□□ 0.03
CLRN3Q8NCR9 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CLRN3Q8NCR9 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC15.26■□□□□ 0.03
CLRN3Q8NCR9 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC15.26■□□□□ 0.03
CLRN3Q8NCR9 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CLRN3Q8NCR9 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC15.26■□□□□ 0.03
CLRN3Q8NCR9 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CLRN3Q8NCR9 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
CLRN3Q8NCR9 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CLRN3Q8NCR9 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CLRN3Q8NCR9 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC15.26■□□□□ 0.03
CLRN3Q8NCR9 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC15.26■□□□□ 0.03
CLRN3Q8NCR9 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
CLRN3Q8NCR9 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
CLRN3Q8NCR9 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC15.25■□□□□ 0.03
CLRN3Q8NCR9 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CLRN3Q8NCR9 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
CLRN3Q8NCR9 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
CLRN3Q8NCR9 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC15.25■□□□□ 0.03
CLRN3Q8NCR9 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
CLRN3Q8NCR9 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CLRN3Q8NCR9 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CLRN3Q8NCR9 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CLRN3Q8NCR9 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
CLRN3Q8NCR9 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
CLRN3Q8NCR9 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CLRN3Q8NCR9 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
CLRN3Q8NCR9 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
CLRN3Q8NCR9 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC15.25■□□□□ 0.03
CLRN3Q8NCR9 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CLRN3Q8NCR9 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC15.25■□□□□ 0.03
CLRN3Q8NCR9 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CLRN3Q8NCR9 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
CLRN3Q8NCR9 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC15.25■□□□□ 0.03
CLRN3Q8NCR9 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CLRN3Q8NCR9 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CLRN3Q8NCR9 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
CLRN3Q8NCR9 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
CLRN3Q8NCR9 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
CLRN3Q8NCR9 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CLRN3Q8NCR9 AL512353.2-201ENST00000448759 1962 ntBASIC15.25■□□□□ 0.03
CLRN3Q8NCR9 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CLRN3Q8NCR9 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CLRN3Q8NCR9 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC15.25■□□□□ 0.03
CLRN3Q8NCR9 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC15.25■□□□□ 0.03
CLRN3Q8NCR9 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CLRN3Q8NCR9 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
CLRN3Q8NCR9 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CLRN3Q8NCR9 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC15.25■□□□□ 0.03
CLRN3Q8NCR9 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC15.25■□□□□ 0.03
CLRN3Q8NCR9 LINC00554-201ENST00000564841 3011 ntBASIC15.25■□□□□ 0.03
CLRN3Q8NCR9 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CLRN3Q8NCR9 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CLRN3Q8NCR9 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
CLRN3Q8NCR9 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CLRN3Q8NCR9 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC15.24■□□□□ 0.03
CLRN3Q8NCR9 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
CLRN3Q8NCR9 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CLRN3Q8NCR9 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC15.24■□□□□ 0.03
CLRN3Q8NCR9 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC15.24■□□□□ 0.03
CLRN3Q8NCR9 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CLRN3Q8NCR9 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
CLRN3Q8NCR9 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CLRN3Q8NCR9 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC15.24■□□□□ 0.03
CLRN3Q8NCR9 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CLRN3Q8NCR9 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
CLRN3Q8NCR9 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
CLRN3Q8NCR9 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
CLRN3Q8NCR9 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC15.24■□□□□ 0.03
CLRN3Q8NCR9 ABR-203ENST00000536794 2213 ntTSL 2 BASIC15.24■□□□□ 0.03
CLRN3Q8NCR9 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
CLRN3Q8NCR9 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
CLRN3Q8NCR9 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
CLRN3Q8NCR9 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
CLRN3Q8NCR9 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC15.24■□□□□ 0.03
CLRN3Q8NCR9 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CLRN3Q8NCR9 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CLRN3Q8NCR9 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
CLRN3Q8NCR9 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CLRN3Q8NCR9 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
CLRN3Q8NCR9 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CLRN3Q8NCR9 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CLRN3Q8NCR9 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CLRN3Q8NCR9 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms