Protein–RNA interactions for Protein: P55289

CDH12, Cadherin-12, humanhuman

Predictions only

Length 794 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH12P55289 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC17.81■□□□□ 0.44
CDH12P55289 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC17.81■□□□□ 0.44
CDH12P55289 AL109923.1-201ENST00000618799 583 ntBASIC17.81■□□□□ 0.44
CDH12P55289 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
CDH12P55289 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CDH12P55289 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
CDH12P55289 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CDH12P55289 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
CDH12P55289 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CDH12P55289 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CDH12P55289 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC17.81■□□□□ 0.44
CDH12P55289 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CDH12P55289 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CDH12P55289 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
CDH12P55289 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
CDH12P55289 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
CDH12P55289 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC17.8■□□□□ 0.44
CDH12P55289 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC17.8■□□□□ 0.44
CDH12P55289 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CDH12P55289 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
CDH12P55289 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CDH12P55289 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CDH12P55289 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
CDH12P55289 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CDH12P55289 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC17.8■□□□□ 0.44
CDH12P55289 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CDH12P55289 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CDH12P55289 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CDH12P55289 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CDH12P55289 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
CDH12P55289 SLC29A4P2-201ENST00000504749 1089 ntBASIC17.8■□□□□ 0.44
CDH12P55289 PNMA6B-201ENST00000538162 1200 ntBASIC17.8■□□□□ 0.44
CDH12P55289 AC060766.5-201ENST00000590539 871 ntBASIC17.8■□□□□ 0.44
CDH12P55289 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC17.8■□□□□ 0.44
CDH12P55289 AC083880.1-201ENST00000608266 535 ntBASIC17.8■□□□□ 0.44
CDH12P55289 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC17.8■□□□□ 0.44
CDH12P55289 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CDH12P55289 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CDH12P55289 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
CDH12P55289 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
CDH12P55289 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CDH12P55289 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CDH12P55289 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC17.8■□□□□ 0.44
CDH12P55289 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
CDH12P55289 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC17.8■□□□□ 0.44
CDH12P55289 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CDH12P55289 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CDH12P55289 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC17.8■□□□□ 0.44
CDH12P55289 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CDH12P55289 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC17.8■□□□□ 0.44
CDH12P55289 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CDH12P55289 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CDH12P55289 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CDH12P55289 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CDH12P55289 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC17.79■□□□□ 0.44
CDH12P55289 SDHAP1-207ENST00000440850 2000 ntBASIC17.79■□□□□ 0.44
CDH12P55289 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CDH12P55289 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CDH12P55289 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CDH12P55289 AL031598.1-201ENST00000561511 1773 ntBASIC17.79■□□□□ 0.44
CDH12P55289 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CDH12P55289 FP475955.4-201ENST00000623131 1990 ntBASIC17.79■□□□□ 0.44
CDH12P55289 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CDH12P55289 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CDH12P55289 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
CDH12P55289 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
CDH12P55289 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CDH12P55289 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
CDH12P55289 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC17.79■□□□□ 0.44
CDH12P55289 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CDH12P55289 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC17.79■□□□□ 0.44
CDH12P55289 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC17.79■□□□□ 0.44
CDH12P55289 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC17.79■□□□□ 0.44
CDH12P55289 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC17.79■□□□□ 0.44
CDH12P55289 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
CDH12P55289 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC17.79■□□□□ 0.44
CDH12P55289 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CDH12P55289 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CDH12P55289 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CDH12P55289 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC17.79■□□□□ 0.44
CDH12P55289 COMP-202ENST00000425807 2292 ntTSL 2 BASIC17.79■□□□□ 0.44
CDH12P55289 AR-207ENST00000612010 3896 ntTSL 5 BASIC17.79■□□□□ 0.44
CDH12P55289 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CDH12P55289 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CDH12P55289 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CDH12P55289 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CDH12P55289 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CDH12P55289 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC17.79■□□□□ 0.44
CDH12P55289 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CDH12P55289 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC17.78■□□□□ 0.44
CDH12P55289 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC17.78■□□□□ 0.44
CDH12P55289 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CDH12P55289 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
CDH12P55289 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CDH12P55289 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
CDH12P55289 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CDH12P55289 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CDH12P55289 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CDH12P55289 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
CDH12P55289 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms