Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CDH6P55285 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
CDH6P55285 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CDH6P55285 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC19.88■□□□□ 0.77
CDH6P55285 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CDH6P55285 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CDH6P55285 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
CDH6P55285 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC19.88■□□□□ 0.77
CDH6P55285 UBQLN4P1-201ENST00000461599 1801 ntBASIC19.88■□□□□ 0.77
CDH6P55285 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CDH6P55285 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC19.88■□□□□ 0.77
CDH6P55285 PRORSD1P-201ENST00000295112 541 ntBASIC19.88■□□□□ 0.77
CDH6P55285 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC19.88■□□□□ 0.77
CDH6P55285 TK2-204ENST00000525974 1178 ntTSL 2 BASIC19.88■□□□□ 0.77
CDH6P55285 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC19.88■□□□□ 0.77
CDH6P55285 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC19.88■□□□□ 0.77
CDH6P55285 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
CDH6P55285 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
CDH6P55285 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC19.88■□□□□ 0.77
CDH6P55285 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
CDH6P55285 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CDH6P55285 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CDH6P55285 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
CDH6P55285 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC19.87■□□□□ 0.77
CDH6P55285 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CDH6P55285 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC19.87■□□□□ 0.77
CDH6P55285 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC19.87■□□□□ 0.77
CDH6P55285 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CDH6P55285 AC006333.2-201ENST00000607957 2099 ntBASIC19.87■□□□□ 0.77
CDH6P55285 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CDH6P55285 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
CDH6P55285 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CDH6P55285 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC19.87■□□□□ 0.77
CDH6P55285 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC19.87■□□□□ 0.77
CDH6P55285 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
CDH6P55285 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC19.87■□□□□ 0.77
CDH6P55285 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC19.87■□□□□ 0.77
CDH6P55285 FEM1AP3-201ENST00000403722 1741 ntBASIC19.87■□□□□ 0.77
CDH6P55285 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CDH6P55285 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CDH6P55285 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
CDH6P55285 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC19.87■□□□□ 0.77
CDH6P55285 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CDH6P55285 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC19.86■□□□□ 0.77
CDH6P55285 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CDH6P55285 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
CDH6P55285 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
CDH6P55285 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CDH6P55285 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CDH6P55285 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC19.86■□□□□ 0.77
CDH6P55285 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CDH6P55285 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CDH6P55285 NIFKP9-201ENST00000419265 221 ntBASIC19.86■□□□□ 0.77
CDH6P55285 TSPY21P-201ENST00000433481 731 ntBASIC19.86■□□□□ 0.77
CDH6P55285 AP002982.1-201ENST00000492365 877 ntBASIC19.86■□□□□ 0.77
CDH6P55285 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
CDH6P55285 AL359736.2-201ENST00000621992 437 ntBASIC19.86■□□□□ 0.77
CDH6P55285 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CDH6P55285 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CDH6P55285 KRT8P41-201ENST00000533985 1514 ntBASIC19.86■□□□□ 0.77
CDH6P55285 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CDH6P55285 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CDH6P55285 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
CDH6P55285 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC19.85■□□□□ 0.77
CDH6P55285 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC19.85■□□□□ 0.77
CDH6P55285 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC19.85■□□□□ 0.77
CDH6P55285 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CDH6P55285 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC19.85■□□□□ 0.77
CDH6P55285 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CDH6P55285 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CDH6P55285 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
CDH6P55285 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CDH6P55285 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CDH6P55285 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC19.85■□□□□ 0.77
CDH6P55285 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC19.85■□□□□ 0.77
CDH6P55285 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC19.85■□□□□ 0.77
CDH6P55285 AL445675.2-201ENST00000620291 557 ntBASIC19.85■□□□□ 0.77
CDH6P55285 FAM197Y4-202ENST00000622692 608 ntBASIC19.85■□□□□ 0.77
CDH6P55285 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
CDH6P55285 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CDH6P55285 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
CDH6P55285 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CDH6P55285 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC19.85■□□□□ 0.77
CDH6P55285 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CDH6P55285 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
CDH6P55285 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC19.85■□□□□ 0.77
CDH6P55285 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
CDH6P55285 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC19.85■□□□□ 0.77
CDH6P55285 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC19.84■□□□□ 0.77
CDH6P55285 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC19.84■□□□□ 0.77
CDH6P55285 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
CDH6P55285 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC19.84■□□□□ 0.77
CDH6P55285 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CDH6P55285 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CDH6P55285 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC19.84■□□□□ 0.77
CDH6P55285 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
CDH6P55285 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC19.84■□□□□ 0.77
CDH6P55285 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC19.84■□□□□ 0.77
CDH6P55285 GOLGA6L5P-202ENST00000515341 1828 ntBASIC19.84■□□□□ 0.77
CDH6P55285 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC19.84■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms