Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
HMGA1P17096 KRT18P38-201ENST00000449496 1282 ntBASIC19.86■□□□□ 0.77
HMGA1P17096 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
HMGA1P17096 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC19.86■□□□□ 0.77
HMGA1P17096 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC19.86■□□□□ 0.77
HMGA1P17096 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC19.86■□□□□ 0.77
HMGA1P17096 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC19.86■□□□□ 0.77
HMGA1P17096 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC19.86■□□□□ 0.77
HMGA1P17096 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
HMGA1P17096 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC19.86■□□□□ 0.77
HMGA1P17096 TEX21P-204ENST00000641479 1693 ntBASIC19.86■□□□□ 0.77
HMGA1P17096 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
HMGA1P17096 PKD1P6-201ENST00000343738 4769 ntBASIC19.86■□□□□ 0.77
HMGA1P17096 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC19.86■□□□□ 0.77
HMGA1P17096 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
HMGA1P17096 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
HMGA1P17096 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
HMGA1P17096 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
HMGA1P17096 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC19.85■□□□□ 0.77
HMGA1P17096 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
HMGA1P17096 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
HMGA1P17096 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
HMGA1P17096 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC19.85■□□□□ 0.77
HMGA1P17096 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC19.85■□□□□ 0.77
HMGA1P17096 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
HMGA1P17096 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC19.85■□□□□ 0.77
HMGA1P17096 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
HMGA1P17096 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC19.85■□□□□ 0.77
HMGA1P17096 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
HMGA1P17096 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
HMGA1P17096 AL359075.1-203ENST00000462729 1002 ntBASIC19.85■□□□□ 0.77
HMGA1P17096 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
HMGA1P17096 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC19.85■□□□□ 0.77
HMGA1P17096 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
HMGA1P17096 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC19.85■□□□□ 0.77
HMGA1P17096 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC19.85■□□□□ 0.77
HMGA1P17096 AL358472.4-201ENST00000633140 710 ntBASIC19.85■□□□□ 0.77
HMGA1P17096 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
HMGA1P17096 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC19.85■□□□□ 0.77
HMGA1P17096 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
HMGA1P17096 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
HMGA1P17096 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
HMGA1P17096 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC19.85■□□□□ 0.77
HMGA1P17096 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC19.84■□□□□ 0.77
HMGA1P17096 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC19.84■□□□□ 0.77
HMGA1P17096 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC19.84■□□□□ 0.77
HMGA1P17096 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
HMGA1P17096 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC19.84■□□□□ 0.77
HMGA1P17096 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
HMGA1P17096 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC19.84■□□□□ 0.77
HMGA1P17096 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC19.84■□□□□ 0.77
HMGA1P17096 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC19.84■□□□□ 0.77
HMGA1P17096 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
HMGA1P17096 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC19.84■□□□□ 0.77
HMGA1P17096 GCSHP2-201ENST00000560971 527 ntBASIC19.84■□□□□ 0.77
HMGA1P17096 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
HMGA1P17096 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
HMGA1P17096 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC19.84■□□□□ 0.77
HMGA1P17096 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC19.84■□□□□ 0.77
HMGA1P17096 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC19.84■□□□□ 0.77
HMGA1P17096 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC19.84■□□□□ 0.77
HMGA1P17096 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
HMGA1P17096 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC19.84■□□□□ 0.77
HMGA1P17096 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
HMGA1P17096 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
HMGA1P17096 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
HMGA1P17096 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
HMGA1P17096 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC19.83■□□□□ 0.77
HMGA1P17096 AP000523.1-201ENST00000398242 1049 ntBASIC19.83■□□□□ 0.77
HMGA1P17096 AL023284.2-201ENST00000405850 579 ntBASIC19.83■□□□□ 0.77
HMGA1P17096 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC19.83■□□□□ 0.77
HMGA1P17096 SNX5-210ENST00000481323 562 ntTSL 3 BASIC19.83■□□□□ 0.77
HMGA1P17096 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
HMGA1P17096 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
HMGA1P17096 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
HMGA1P17096 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.76
HMGA1P17096 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
HMGA1P17096 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC19.83■□□□□ 0.76
HMGA1P17096 KRT8P3-201ENST00000519669 1449 ntBASIC19.83■□□□□ 0.76
HMGA1P17096 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
HMGA1P17096 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
HMGA1P17096 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
HMGA1P17096 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
HMGA1P17096 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.76
HMGA1P17096 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
HMGA1P17096 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
HMGA1P17096 BID-204ENST00000399767 2129 ntTSL 2 BASIC19.82■□□□□ 0.76
HMGA1P17096 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
HMGA1P17096 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
HMGA1P17096 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
HMGA1P17096 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC19.82■□□□□ 0.76
HMGA1P17096 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
HMGA1P17096 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
HMGA1P17096 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
HMGA1P17096 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
HMGA1P17096 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
HMGA1P17096 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC19.82■□□□□ 0.76
HMGA1P17096 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
HMGA1P17096 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
HMGA1P17096 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC19.82■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms