Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VIMP08670 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
VIMP08670 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC19.2■□□□□ 0.66
VIMP08670 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
VIMP08670 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
VIMP08670 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
VIMP08670 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
VIMP08670 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VIMP08670 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VIMP08670 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC19.2■□□□□ 0.66
VIMP08670 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
VIMP08670 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
VIMP08670 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
VIMP08670 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC19.2■□□□□ 0.66
VIMP08670 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VIMP08670 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC19.2■□□□□ 0.66
VIMP08670 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VIMP08670 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC19.2■□□□□ 0.66
VIMP08670 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC19.2■□□□□ 0.66
VIMP08670 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC19.2■□□□□ 0.66
VIMP08670 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VIMP08670 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC19.2■□□□□ 0.66
VIMP08670 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
VIMP08670 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VIMP08670 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC19.2■□□□□ 0.66
VIMP08670 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
VIMP08670 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
VIMP08670 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VIMP08670 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VIMP08670 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
VIMP08670 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
VIMP08670 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
VIMP08670 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
VIMP08670 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
VIMP08670 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
VIMP08670 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
VIMP08670 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
VIMP08670 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC19.19■□□□□ 0.66
VIMP08670 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
VIMP08670 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
VIMP08670 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
VIMP08670 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
VIMP08670 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
VIMP08670 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC19.19■□□□□ 0.66
VIMP08670 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
VIMP08670 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC19.19■□□□□ 0.66
VIMP08670 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC19.19■□□□□ 0.66
VIMP08670 CASP6-205ENST00000505486 538 ntTSL 4 BASIC19.19■□□□□ 0.66
VIMP08670 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC19.19■□□□□ 0.66
VIMP08670 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
VIMP08670 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC19.19■□□□□ 0.66
VIMP08670 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC19.19■□□□□ 0.66
VIMP08670 MKRN4P-201ENST00000444706 1521 ntBASIC19.19■□□□□ 0.66
VIMP08670 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
VIMP08670 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
VIMP08670 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC19.19■□□□□ 0.66
VIMP08670 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
VIMP08670 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
VIMP08670 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
VIMP08670 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
VIMP08670 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
VIMP08670 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
VIMP08670 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
VIMP08670 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC19.18■□□□□ 0.66
VIMP08670 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC19.18■□□□□ 0.66
VIMP08670 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
VIMP08670 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
VIMP08670 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
VIMP08670 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
VIMP08670 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC19.18■□□□□ 0.66
VIMP08670 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
VIMP08670 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
VIMP08670 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
VIMP08670 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC19.18■□□□□ 0.66
VIMP08670 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
VIMP08670 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
VIMP08670 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
VIMP08670 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC19.18■□□□□ 0.66
VIMP08670 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC19.17■□□□□ 0.66
VIMP08670 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
VIMP08670 ZNF815P-204ENST00000434898 1737 ntBASIC19.17■□□□□ 0.66
VIMP08670 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VIMP08670 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC19.17■□□□□ 0.66
VIMP08670 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VIMP08670 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
VIMP08670 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VIMP08670 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC19.17■□□□□ 0.66
VIMP08670 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC19.17■□□□□ 0.66
VIMP08670 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
VIMP08670 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC19.17■□□□□ 0.66
VIMP08670 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
VIMP08670 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC19.17■□□□□ 0.66
VIMP08670 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC19.17■□□□□ 0.66
VIMP08670 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC19.17■□□□□ 0.66
VIMP08670 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC19.17■□□□□ 0.66
VIMP08670 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC19.17■□□□□ 0.66
VIMP08670 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
VIMP08670 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
VIMP08670 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VIMP08670 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC19.17■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms