Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC20.53■□□□□ 0.88
SMIM28A0A1B0GU29 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SMIM28A0A1B0GU29 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SMIM28A0A1B0GU29 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SMIM28A0A1B0GU29 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
SMIM28A0A1B0GU29 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SMIM28A0A1B0GU29 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SMIM28A0A1B0GU29 ADM-207ENST00000530439 1839 ntTSL 2 BASIC20.53■□□□□ 0.88
SMIM28A0A1B0GU29 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
SMIM28A0A1B0GU29 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SMIM28A0A1B0GU29 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SMIM28A0A1B0GU29 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SMIM28A0A1B0GU29 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SMIM28A0A1B0GU29 CD70-202ENST00000423145 881 ntTSL 2 BASIC20.52■□□□□ 0.88
SMIM28A0A1B0GU29 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC20.52■□□□□ 0.88
SMIM28A0A1B0GU29 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SMIM28A0A1B0GU29 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
SMIM28A0A1B0GU29 KRT18P35-201ENST00000510488 1269 ntBASIC20.52■□□□□ 0.88
SMIM28A0A1B0GU29 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC20.52■□□□□ 0.88
SMIM28A0A1B0GU29 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SMIM28A0A1B0GU29 NME3-204ENST00000563498 920 ntTSL 2 BASIC20.52■□□□□ 0.88
SMIM28A0A1B0GU29 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
SMIM28A0A1B0GU29 AL512604.3-201ENST00000569583 964 ntBASIC20.52■□□□□ 0.88
SMIM28A0A1B0GU29 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC20.52■□□□□ 0.88
SMIM28A0A1B0GU29 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC20.52■□□□□ 0.88
SMIM28A0A1B0GU29 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
SMIM28A0A1B0GU29 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC20.52■□□□□ 0.87
SMIM28A0A1B0GU29 KRT8P45-201ENST00000414328 1447 ntBASIC20.52■□□□□ 0.87
SMIM28A0A1B0GU29 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC20.52■□□□□ 0.87
SMIM28A0A1B0GU29 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
SMIM28A0A1B0GU29 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
SMIM28A0A1B0GU29 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
SMIM28A0A1B0GU29 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SMIM28A0A1B0GU29 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SMIM28A0A1B0GU29 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SMIM28A0A1B0GU29 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC20.51■□□□□ 0.87
SMIM28A0A1B0GU29 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC20.51■□□□□ 0.87
SMIM28A0A1B0GU29 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SMIM28A0A1B0GU29 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SMIM28A0A1B0GU29 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
SMIM28A0A1B0GU29 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
SMIM28A0A1B0GU29 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SMIM28A0A1B0GU29 AC117947.1-201ENST00000427448 529 ntBASIC20.51■□□□□ 0.87
SMIM28A0A1B0GU29 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SMIM28A0A1B0GU29 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SMIM28A0A1B0GU29 AC139887.4-201ENST00000607877 719 ntBASIC20.51■□□□□ 0.87
SMIM28A0A1B0GU29 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
SMIM28A0A1B0GU29 AC008622.2-201ENST00000617006 1229 ntBASIC20.51■□□□□ 0.87
SMIM28A0A1B0GU29 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SMIM28A0A1B0GU29 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SMIM28A0A1B0GU29 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
SMIM28A0A1B0GU29 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC20.51■□□□□ 0.87
SMIM28A0A1B0GU29 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SMIM28A0A1B0GU29 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
SMIM28A0A1B0GU29 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SMIM28A0A1B0GU29 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
SMIM28A0A1B0GU29 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SMIM28A0A1B0GU29 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC20.5■□□□□ 0.87
SMIM28A0A1B0GU29 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC20.5■□□□□ 0.87
SMIM28A0A1B0GU29 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC20.5■□□□□ 0.87
SMIM28A0A1B0GU29 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC20.5■□□□□ 0.87
SMIM28A0A1B0GU29 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SMIM28A0A1B0GU29 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SMIM28A0A1B0GU29 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC20.5■□□□□ 0.87
SMIM28A0A1B0GU29 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC20.5■□□□□ 0.87
SMIM28A0A1B0GU29 AK4P3-201ENST00000418260 669 ntBASIC20.5■□□□□ 0.87
SMIM28A0A1B0GU29 MIR4674-201ENST00000582457 87 ntBASIC20.5■□□□□ 0.87
SMIM28A0A1B0GU29 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SMIM28A0A1B0GU29 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SMIM28A0A1B0GU29 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
SMIM28A0A1B0GU29 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SMIM28A0A1B0GU29 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
SMIM28A0A1B0GU29 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
SMIM28A0A1B0GU29 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC20.49■□□□□ 0.87
SMIM28A0A1B0GU29 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC20.49■□□□□ 0.87
SMIM28A0A1B0GU29 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC20.49■□□□□ 0.87
SMIM28A0A1B0GU29 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
SMIM28A0A1B0GU29 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
SMIM28A0A1B0GU29 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC20.49■□□□□ 0.87
SMIM28A0A1B0GU29 PHB2-202ENST00000440277 996 ntTSL 5 BASIC20.49■□□□□ 0.87
SMIM28A0A1B0GU29 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC20.49■□□□□ 0.87
SMIM28A0A1B0GU29 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
SMIM28A0A1B0GU29 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC20.49■□□□□ 0.87
SMIM28A0A1B0GU29 COX11P1-201ENST00000489116 835 ntBASIC20.49■□□□□ 0.87
SMIM28A0A1B0GU29 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC20.49■□□□□ 0.87
SMIM28A0A1B0GU29 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC20.49■□□□□ 0.87
SMIM28A0A1B0GU29 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SMIM28A0A1B0GU29 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC20.49■□□□□ 0.87
SMIM28A0A1B0GU29 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC20.49■□□□□ 0.87
SMIM28A0A1B0GU29 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SMIM28A0A1B0GU29 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SMIM28A0A1B0GU29 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
SMIM28A0A1B0GU29 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SMIM28A0A1B0GU29 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC20.48■□□□□ 0.87
SMIM28A0A1B0GU29 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SMIM28A0A1B0GU29 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
SMIM28A0A1B0GU29 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SMIM28A0A1B0GU29 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC20.48■□□□□ 0.87
SMIM28A0A1B0GU29 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
SMIM28A0A1B0GU29 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC20.48■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 48.6 ms