Protein–RNA interactions for Protein: Q9Y5G4

PCDHGA9, Protocadherin gamma-A9, humanhuman

Known RBP Predictions only

Length 932 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA9Q9Y5G4 AC135983.2-203ENST00000454486 1613 ntBASIC23.77■■□□□ 1.4
PCDHGA9Q9Y5G4 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC23.77■■□□□ 1.4
PCDHGA9Q9Y5G4 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC23.76■■□□□ 1.39
PCDHGA9Q9Y5G4 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC23.76■■□□□ 1.39
PCDHGA9Q9Y5G4 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC23.76■■□□□ 1.39
PCDHGA9Q9Y5G4 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC23.76■■□□□ 1.39
PCDHGA9Q9Y5G4 AC127502.1-201ENST00000399971 1502 ntBASIC23.75■■□□□ 1.39
PCDHGA9Q9Y5G4 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
PCDHGA9Q9Y5G4 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC23.75■■□□□ 1.39
PCDHGA9Q9Y5G4 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC23.75■■□□□ 1.39
PCDHGA9Q9Y5G4 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC23.74■■□□□ 1.39
PCDHGA9Q9Y5G4 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
PCDHGA9Q9Y5G4 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC23.74■■□□□ 1.39
PCDHGA9Q9Y5G4 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC23.74■■□□□ 1.39
PCDHGA9Q9Y5G4 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC23.74■■□□□ 1.39
PCDHGA9Q9Y5G4 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
PCDHGA9Q9Y5G4 AC012354.3-201ENST00000623734 483 ntBASIC23.74■■□□□ 1.39
PCDHGA9Q9Y5G4 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
PCDHGA9Q9Y5G4 CHST11-203ENST00000547956 936 ntTSL 2 BASIC23.73■■□□□ 1.39
PCDHGA9Q9Y5G4 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC23.72■■□□□ 1.39
PCDHGA9Q9Y5G4 WHAMMP2-203ENST00000563942 1603 ntBASIC23.72■■□□□ 1.39
PCDHGA9Q9Y5G4 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC23.72■■□□□ 1.39
PCDHGA9Q9Y5G4 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC23.72■■□□□ 1.39
PCDHGA9Q9Y5G4 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC23.72■■□□□ 1.39
PCDHGA9Q9Y5G4 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC23.72■■□□□ 1.39
PCDHGA9Q9Y5G4 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
PCDHGA9Q9Y5G4 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC23.71■■□□□ 1.39
PCDHGA9Q9Y5G4 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.39
PCDHGA9Q9Y5G4 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
PCDHGA9Q9Y5G4 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
PCDHGA9Q9Y5G4 AC148477.6-201ENST00000623746 465 ntBASIC23.7■■□□□ 1.38
PCDHGA9Q9Y5G4 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC23.7■■□□□ 1.38
PCDHGA9Q9Y5G4 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC23.69■■□□□ 1.38
PCDHGA9Q9Y5G4 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC23.68■■□□□ 1.38
PCDHGA9Q9Y5G4 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
PCDHGA9Q9Y5G4 AC139426.1-201ENST00000568218 2529 ntBASIC23.67■■□□□ 1.38
PCDHGA9Q9Y5G4 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
PCDHGA9Q9Y5G4 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
PCDHGA9Q9Y5G4 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC23.66■■□□□ 1.38
PCDHGA9Q9Y5G4 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
PCDHGA9Q9Y5G4 AC110285.7-201ENST00000624417 1536 ntBASIC23.66■■□□□ 1.38
PCDHGA9Q9Y5G4 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
PCDHGA9Q9Y5G4 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC23.66■■□□□ 1.38
PCDHGA9Q9Y5G4 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC23.65■■□□□ 1.38
PCDHGA9Q9Y5G4 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC23.65■■□□□ 1.38
PCDHGA9Q9Y5G4 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC23.65■■□□□ 1.38
PCDHGA9Q9Y5G4 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC23.65■■□□□ 1.38
PCDHGA9Q9Y5G4 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC23.65■■□□□ 1.38
PCDHGA9Q9Y5G4 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
PCDHGA9Q9Y5G4 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
PCDHGA9Q9Y5G4 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
PCDHGA9Q9Y5G4 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC23.63■■□□□ 1.37
PCDHGA9Q9Y5G4 AC060814.1-201ENST00000554326 538 ntBASIC23.63■■□□□ 1.37
PCDHGA9Q9Y5G4 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC23.62■■□□□ 1.37
PCDHGA9Q9Y5G4 RPS2-210ENST00000530225 765 ntTSL 2 BASIC23.62■■□□□ 1.37
PCDHGA9Q9Y5G4 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC23.62■■□□□ 1.37
PCDHGA9Q9Y5G4 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
PCDHGA9Q9Y5G4 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
PCDHGA9Q9Y5G4 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC23.61■■□□□ 1.37
PCDHGA9Q9Y5G4 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC23.61■■□□□ 1.37
PCDHGA9Q9Y5G4 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC23.61■■□□□ 1.37
PCDHGA9Q9Y5G4 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
PCDHGA9Q9Y5G4 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC23.61■■□□□ 1.37
PCDHGA9Q9Y5G4 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
PCDHGA9Q9Y5G4 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC23.6■■□□□ 1.37
PCDHGA9Q9Y5G4 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC23.6■■□□□ 1.37
PCDHGA9Q9Y5G4 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
PCDHGA9Q9Y5G4 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC23.6■■□□□ 1.37
PCDHGA9Q9Y5G4 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC23.59■■□□□ 1.37
PCDHGA9Q9Y5G4 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
PCDHGA9Q9Y5G4 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC23.59■■□□□ 1.37
PCDHGA9Q9Y5G4 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC23.58■■□□□ 1.37
PCDHGA9Q9Y5G4 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
PCDHGA9Q9Y5G4 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC23.57■■□□□ 1.36
PCDHGA9Q9Y5G4 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC23.57■■□□□ 1.36
PCDHGA9Q9Y5G4 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC23.57■■□□□ 1.36
PCDHGA9Q9Y5G4 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC23.57■■□□□ 1.36
PCDHGA9Q9Y5G4 HYI-213ENST00000583037 1322 ntTSL 5 BASIC23.57■■□□□ 1.36
PCDHGA9Q9Y5G4 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC23.57■■□□□ 1.36
PCDHGA9Q9Y5G4 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC23.56■■□□□ 1.36
PCDHGA9Q9Y5G4 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
PCDHGA9Q9Y5G4 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
PCDHGA9Q9Y5G4 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC23.55■■□□□ 1.36
PCDHGA9Q9Y5G4 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC23.55■■□□□ 1.36
PCDHGA9Q9Y5G4 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC23.55■■□□□ 1.36
PCDHGA9Q9Y5G4 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
PCDHGA9Q9Y5G4 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC23.55■■□□□ 1.36
PCDHGA9Q9Y5G4 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC23.55■■□□□ 1.36
PCDHGA9Q9Y5G4 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
PCDHGA9Q9Y5G4 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
PCDHGA9Q9Y5G4 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC23.55■■□□□ 1.36
PCDHGA9Q9Y5G4 AL135925.1-201ENST00000605920 1701 ntBASIC23.55■■□□□ 1.36
PCDHGA9Q9Y5G4 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
PCDHGA9Q9Y5G4 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC23.55■■□□□ 1.36
PCDHGA9Q9Y5G4 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
PCDHGA9Q9Y5G4 U85056.1-201ENST00000616429 682 ntBASIC23.54■■□□□ 1.36
PCDHGA9Q9Y5G4 MIR219A2-201ENST00000608502 1504 ntBASIC23.54■■□□□ 1.36
PCDHGA9Q9Y5G4 AC018358.1-201ENST00000631079 1402 ntBASIC23.53■■□□□ 1.36
PCDHGA9Q9Y5G4 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
PCDHGA9Q9Y5G4 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC23.53■■□□□ 1.36
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms